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13_1_20cm_2_scaffold_3189

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3189_1
unknown

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comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

13_1_20cm_2_scaffold_3189_2
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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comp(50..505)
DNA (456bp) protein (152aa)
(2Fe-2S)-binding protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XJL5_SORCE
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RBG_16_RIF_CHLX_70_13_curated
(2Fe-2S)-binding protein
13_1_20cm_2_scaffold_3189_3
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(502..2658)
DNA (2157bp) protein (719aa)
Putative xanthine dehydrogenase n=1 Tax=uncultured bacterium 66 RepID=E3T662_9BACT alias=16ft_combo_ws3_scaffold_5275_9 id=5225234 tax=16ft_combo_ws3 species=uncultured bacterium 66 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein Tax=RBG_16_RIF_CHLX_72_14_curated
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein
13_1_20cm_2_scaffold_3189_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3000..4559
DNA (1560bp) protein (520aa)
malate synthase (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
malate synthase (EC:2.3.3.9)
Malate synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022L4_SOLUE rbh
13_1_20cm_2_scaffold_3189_5
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4564..5844
DNA (1281bp) protein (427aa)
Isocitrate lyase {ECO:0000313|EMBL:ADU51871.1}; EC=4.1.3.1 {ECO:0000313|EMBL:ADU51871.1};; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Se
isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SHZ1_THEM7
13_1_20cm_2_scaffold_3189_6
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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6278..7246
DNA (969bp) protein (323aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] Tax=RBG_16_Ac
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GKD5_SORC5
13_1_20cm_2_scaffold_3189_7
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

7276..8115
DNA (840bp) protein (280aa)
hypothetical protein; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=RBG_16_Acidobacteria_68_9_curated
B-alanine synthase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q097R1_STIAD
beta-alanine synthase
13_1_20cm_2_scaffold_3189_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8159..9547
DNA (1389bp) protein (463aa)
Dihydropyrimidinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKX9_9BACT
Dihydropyrimidinase {ECO:0000313|EMBL:EEF59473.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedospha
dihydropyrimidinase
13_1_20cm_2_scaffold_3189_9
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

9547..10833
DNA (1287bp) protein (429aa)
putative aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=RBG_16_Zixibacteria_53_22_curated
Aminotransferase n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FRM2_STIAD alias=16ft_combo_ws3_scaffold_8099_19 id=5225712 tax=16ft_combo_ws3 species=Stigmatella aurantiaca (strain DW4/3-1) genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria rbh
alanine--glyoxylate transaminase
13_1_20cm_2_scaffold_3189_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10830..12332
DNA (1503bp) protein (501aa)
Cytosine/purines, uracil, thiamine, allantoin transporter n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q099I5_STIAD alias=16ft_combo_ws3_scaffold_1480_35 id=5223961 tax=16ft_combo_ws3 species=Stigmatella aurantiaca (strain DW4/3-1) genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria rbh
nitrate reductase Tax=RBG_16_RIF_WS3X_71_46_curated
nitrate reductase
13_1_20cm_2_scaffold_3189_11
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12325..13566
DNA (1242bp) protein (414aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] Tax=RBG_16_Deltaproteobacteria_71_12_curated
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=6 Tax=Geobacillus RepID=C9S154_GEOSY
oxidoreductase
13_1_20cm_2_scaffold_3189_12
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13808..14800
DNA (993bp) protein (331aa)
dihydropyrimidine dehydrogenase (EC:1.3.1.1 1.3.1.2)
Dihydropyrimidine dehydrogenase [NADP+] n=1 Tax=uncultured bacterium A1Q1_fos_18 RepID=L7VVQ1_9BACT
yeiA; dihydroorotate dehydrogenase family protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
13_1_20cm_2_scaffold_3189_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(14797..16638)
DNA (1842bp) protein (614aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT alias=16ft_combo_ws3_scaffold_10754_22 id=5223291 tax=16ft_combo_ws3 species=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes
ABC transporter transmembrane region
13_1_20cm_2_scaffold_3189_14
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16649..17260)
DNA (612bp) protein (204aa)
Cation/multidrug efflux pump n=1 Tax=uncultured bacterium RepID=K1XNF4_9BACT
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein
13_1_20cm_2_scaffold_3189_15
unknown

Not on your lists

17580..18035
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_20cm_2_scaffold_3189_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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18039..19403
DNA (1365bp) protein (455aa)
Pilus retraction protein PilT n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG06_CHLTF
pilus retraction protein PilT; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
twitching motility protein
Displaying 16 items

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