ggKbase home page

13_1_20cm_2_scaffold_3214

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3214_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..586
DNA (585bp) protein (195aa)
Peptidase M20 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QE4_SOLUE
peptidase M20 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M20
13_1_20cm_2_scaffold_3214_2

Not on your lists

comp(609..1250)
DNA (642bp) protein (214aa)
oxidoreductase n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00037729EE
Molybdopterin binding protein {ECO:0000313|EMBL:AFK79179.1}; TaxID=1191433 species="Bacteria; environmental samples.;" source="uncultured bacterium F25-01.;"
oxidoreductase molybdopterin binding protein
13_1_20cm_2_scaffold_3214_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1256..1876)
DNA (621bp) protein (207aa)
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX3_9BACT
13_1_20cm_2_scaffold_3214_4
unknown

Not on your lists

comp(1926..2369)
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_20cm_2_scaffold_3214_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2366..3754)
DNA (1389bp) protein (463aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C7_GEMAT rbh
dihydrolipoamide dehydrogenase
13_1_20cm_2_scaffold_3214_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3764..3994)
DNA (231bp) protein (77aa)
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cur
Pyruvate dehydrogenase E2 component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D0_GEMAT
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
13_1_20cm_2_scaffold_3214_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4952..5932)
DNA (981bp) protein (327aa)
pdhB; pyruvate dehydrogenase E1 component beta subunit (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D1_GEMAT
Transketolase central region
13_1_20cm_2_scaffold_3214_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5936..6931)
DNA (996bp) protein (332aa)
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D2_GEMAT rbh
pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
13_1_20cm_2_scaffold_3214_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6928..7863)
DNA (936bp) protein (312aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Lipoyl synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D3_GEMAT
Lipoyl synthase
13_1_20cm_2_scaffold_3214_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7910..8911)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_2_scaffold_3214_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8934..10043)
DNA (1110bp) protein (370aa)
Oxidoreductase n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EGN7_9ACTO
glycine oxidase ThiO Tax=GWC2_Gemmatimonadetes_71_10_curated
glycine oxidase ThiO
13_1_20cm_2_scaffold_3214_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10087..10308
DNA (222bp) protein (74aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_3214_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10305..11264)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6D2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHG90209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_2_scaffold_3214_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11261..11860)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N9_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Protein of unknown function DUF3108
13_1_20cm_2_scaffold_3214_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11829..12749)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D5_GEMAT
serine/threonine protein kinase-like protein Tax=GWC2_Gemmatimonadetes_71_10_curated
glycosyl transferase family 2
13_1_20cm_2_scaffold_3214_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12761..13798)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI00036487AF
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
group 1 glycosyl transferase
13_1_20cm_2_scaffold_3214_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13779..14360)
DNA (582bp) protein (194aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Integral membrane sensor hybrid histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK45_9BACT
GAF sensor hybrid histidine kinase
Displaying 17 items

View Taxonomy