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13_1_20cm_2_scaffold_338

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_338_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1..537)
DNA (537bp) protein (179aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pth:PTH_1538 CoxL; aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs alias=RBG9_66_145,RBG9_C00066G00144 id=1247861 tax=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_20cm_2_scaffold_338_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(534..1019)
DNA (486bp) protein (162aa)
(2Fe-2S)-binding domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U5B6_9CHLR alias=RBG9_66_146,RBG9_C00066G00145 id=1247862 tax=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
13_1_20cm_2_scaffold_338_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1409..2758
DNA (1350bp) protein (450aa)
Fis family transcriptional regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NtrC family two-component response regulator alias=RBG1_1210,RBG1_C00001G01210 id=1250768 tax=RBG1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes
Fis family transcriptional regulator
13_1_20cm_2_scaffold_338_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2873..3382
DNA (510bp) protein (170aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Geobacter metallireducens RepID=Q39TQ0_GEOMG
two component sigma54 specific Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
bamW; sigma-54-dependent transcriptional response regulator
13_1_20cm_2_scaffold_338_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3405..4025)
DNA (621bp) protein (207aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
ATP:cob(I)alamin adenosyltransferase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626B46
13_1_20cm_2_scaffold_338_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4100..5287
DNA (1188bp) protein (396aa)
Fosmidomycin resistance protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UB58_9RHOB
transmembrane efflux protein Tax=GWA2_Rokubacteria_73_35_curated
major Facilitator Superfamily protein
13_1_20cm_2_scaffold_338_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5342..6832)
DNA (1491bp) protein (497aa)
benzoate transporter n=1 Tax=Mycobacterium intracellulare RepID=UPI0001B45C8B rbh
beta subunit of phenylphosphate carboxylase Tax=GWA2_Rokubacteria_73_35_curated
benzoate transporter
13_1_20cm_2_scaffold_338_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6868..7938)
DNA (1071bp) protein (357aa)
Luciferase-like, subgroup n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9M2_SPHTD
luciferase-like protein Tax=GWA2_Rokubacteria_70_23_curated
luciferase-like protein
13_1_20cm_2_scaffold_338_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7942..8709)
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase/isomerase n=3 Tax=Sulfolobus islandicus RepID=C3MWJ4_SULIM
Enoyl-CoA hydratase/isomerase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase
13_1_20cm_2_scaffold_338_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8827..9855)
DNA (1029bp) protein (343aa)
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SHZ5_9BACT
13_1_20cm_2_scaffold_338_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9852..11126)
DNA (1275bp) protein (425aa)
Phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=GWA2_Rokubacteria_73_35_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003656273
13_1_20cm_2_scaffold_338_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11318..11761)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003658675
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
carbon monoxide dehydrogenase subunit G
13_1_20cm_2_scaffold_338_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11817..13016)
DNA (1200bp) protein (400aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
aatA; aspartate aminotransferase A (AspAT) (EC:2.6.1.1)
Aspartate aminotransferase A (AspAT) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB9_9BACT
13_1_20cm_2_scaffold_338_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13049..13534)
DNA (486bp) protein (162aa)
phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWA2_Rokubacteria_73_35_curated
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XV58_9BACT
13_1_20cm_2_scaffold_338_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13544..14098)
DNA (555bp) protein (185aa)
Putative methyltransferase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2E3_DESAP
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
putative methyltransferase
13_1_20cm_2_scaffold_338_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14108..16222)
DNA (2115bp) protein (705aa)
recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent DNA helicase RecG n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74DJ0_GEOSL
recG; ATP-dependent DNA helicase RecG
13_1_20cm_2_scaffold_338_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


16267..16458
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WW84_ALIAD
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L28
13_1_20cm_2_scaffold_338_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16681..17730)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AZH6_9ZZZZ
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_20cm_2_scaffold_338_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17860..19545)
DNA (1686bp) protein (562aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJC5_KORVE alias=16ft_combo_ws3_scaffold_2718_10 id=5224633 tax=16ft_combo_ws3 species=Koribacter versatilis (strain Ellin345) genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_338_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19546..19920)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX85_RUBXD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_338_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19917..20801)
DNA (885bp) protein (295aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (PpGpp synthetase I) ((P)ppGpp synthetase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFC3_9BACT
Displaying 21 items

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