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13_1_20cm_2_scaffold_3458

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3458_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(8..436)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARD0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05291.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_20cm_2_scaffold_3458_2
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(553..1728)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS88_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05288.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_20cm_2_scaffold_3458_3
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(1728..2288)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARK9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05287.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_20cm_2_scaffold_3458_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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2780..3658
DNA (879bp) protein (293aa)
Methyl-accepting chemotaxis protein n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CV66_9ARCH
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_20cm_2_scaffold_3458_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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3628..3951
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KM85_9ARCH
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_20cm_2_scaffold_3458_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3954..5762)
DNA (1809bp) protein (603aa)
Putative glycosyl transferase n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8G2 RepID=B3TAP6_9ARCH
Glycosyl transferase family 2 {ECO:0000313|EMBL:AIC14269.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososph
Glycosyl transferase family 2
13_1_20cm_2_scaffold_3458_7
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(5957..6910)
DNA (954bp) protein (318aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARK3_9ARCH
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:CDI05282.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
4Fe-4S ferredoxin
13_1_20cm_2_scaffold_3458_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(6950..7270)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARC2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05281.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_20cm_2_scaffold_3458_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(7260..8105)
DNA (846bp) protein (282aa)
Thiosulfate sulfurtransferase (EC:2.8.1.1)
Rhodanese domain-containing protein n=2 Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KM89_9ARCH
rhodanese domain-containing protein Tax=CSP1_1_Thaumarchaeota
13_1_20cm_2_scaffold_3458_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8196..9011
DNA (816bp) protein (272aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=CSP1_1_Thaumarchaeota
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5D7_NITMS rbh
ATP-NAD/AcoX kinase
13_1_20cm_2_scaffold_3458_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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9001..9507
DNA (507bp) protein (169aa)
Putative PIN domain protein n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBD2_9ARCH
nucleotide binding protein Tax=CSP1_1_Thaumarchaeota
Nucleotide binding protein
13_1_20cm_2_scaffold_3458_12
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(9539..10225)
DNA (687bp) protein (229aa)
ERCC4 domain protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARB9_9ARCH rbh
ERCC4 domain protein {ECO:0000313|EMBL:CDI05276.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ERCC4 domain-containing protein
13_1_20cm_2_scaffold_3458_13
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(10252..10644)
DNA (393bp) protein (131aa)
Prefoldin subunit beta n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KM94_9ARCH
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; TaxID=886738 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candi
pfdB; prefoldin, subunit beta
13_1_20cm_2_scaffold_3458_14
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10668..10967)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KM95_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFI17903.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C
hypothetical protein
13_1_20cm_2_scaffold_3458_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11117..11920)
DNA (804bp) protein (268aa)
Putative exosome complex exonuclease 2 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARJ3_9ARCH
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=CSP1_1_Thaumarchaeota
3' exoribonuclease family, domain 1
13_1_20cm_2_scaffold_3458_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11923..12639)
DNA (717bp) protein (239aa)
RNase PH (EC:2.7.7.56); K11600 exosome complex component RRP41 Tax=CSP1_1_Thaumarchaeota
exosome complex exonuclease 1 (EC:3.1.13.-)
Putative exosome complex exonuclease 1 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARB3_9ARCH rbh
13_1_20cm_2_scaffold_3458_17
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(12620..13321)
DNA (702bp) protein (234aa)
Exosome complex component Rrp4 n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B7Z6_9ARCH rbh
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1229909 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumil
exosome complex RNA-binding protein Rrp4
13_1_20cm_2_scaffold_3458_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(13321..14007)
DNA (687bp) protein (229aa)
Putative ribosome maturation protein SDO1 homolog n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARS5_9ARCH
RNA-associated protein Tax=CSP1_1_Thaumarchaeota
Shwachman-Bodian-Diamond syndrome protein
13_1_20cm_2_scaffold_3458_19
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

14094..14729
DNA (636bp) protein (212aa)
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B2R0_9ARCH
RNA polymerase insert {ECO:0000313|EMBL:AJM93144.1}; TaxID=1582439 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
RNA polymerase insert
13_1_20cm_2_scaffold_3458_20

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14770..15117
DNA (348bp) protein (116aa)
Putative ribosomal protein L15 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBC1_9ARCH
Ribosomal protein L15 (RP-L18e, RPL18) {ECO:0000313|EMBL:AIF11604.1}; TaxID=1456179 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_52_H07.;"
rpl18e; 50S ribosomal protein L18e
13_1_20cm_2_scaffold_3458_21
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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15110..15592
DNA (483bp) protein (161aa)
50S ribosomal protein L13 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG5E24 RepID=B3T8C9_9ARCH
ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=CSP1_1_Thaumarchaeota
rpl13p; 50S ribosomal protein L13p
13_1_20cm_2_scaffold_3458_22
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


15592..16035
DNA (444bp) protein (148aa)
30S ribosomal protein S9 n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5C2_NITMS
30S ribosomal protein S9 Tax=CSP1_1_Thaumarchaeota
30S ribosomal protein S9
13_1_20cm_2_scaffold_3458_23
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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16038..16772
DNA (735bp) protein (245aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=CSP1_1_Thaumarchaeota
Nucleotidyl transferase n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D039_9ARCH
nucleotidyl transferase
13_1_20cm_2_scaffold_3458_24

Not on your lists

comp(16753..17343)
DNA (591bp) protein (197aa)
3-isopropylmalate dehydratase small subunit protein {ECO:0000313|EMBL:KFM17051.1}; EC=4.2.1.33 {ECO:0000313|EMBL:KFM17051.1};; TaxID=1502291 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeo
leuD; 3-isopropylmalate isomerase subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase, small subunit n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KMB3_9ARCH
13_1_20cm_2_scaffold_3458_25
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(17345..18757)
DNA (1413bp) protein (471aa)
3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:EPA05435.1}; EC=4.2.1.33 {ECO:0000313|EMBL:EPA05435.1};; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilace
leuC; 3-isopropylmalate isomerase subunit, dehydratase component (EC:4.2.1.33)
3-isopropylmalate dehydratase, large subunit n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E272_9ARCH rbh
13_1_20cm_2_scaffold_3458_26
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(18915..19220)
DNA (306bp) protein (102aa)
3-isopropylmalate dehydratase small subunit n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B7Y4_9ARCH
3-isopropylmalate dehydratase small subunit Tax=CSP1_1_Thaumarchaeota
3-isopropylmalate dehydratase small subunit
13_1_20cm_2_scaffold_3458_27
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(19217..19951)
DNA (735bp) protein (245aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
leuC; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARU7_9ARCH rbh
Displaying 27 items

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