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13_1_20cm_2_scaffold_5687

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_5687_1

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comp(2..277)
DNA (276bp) protein (92aa)
Alpha/beta hydrolase fold protein n=1 Tax=Desulfosporosinus meridiei DSM 13257 RepID=G6G789_9FIRM alias=RBG9_C00004G00037 id=1244455 tax=RBG9 species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
Marine sediment metagenome DNA, contig: S06H3_L07386 {ECO:0000313|EMBL:GAI11868.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
lysophospholipase
13_1_20cm_2_scaffold_5687_2
unknown

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comp(274..870)
DNA (597bp) protein (199aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_3
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(891..2129)
DNA (1239bp) protein (413aa)
alpha-galactosidase n=1 Tax=Haladaptatus paucihalophilus RepID=UPI00035ED4C8
glycoside hydrolase
Tax=BJP_IG2158_Thermoplasmatales_53_16
13_1_20cm_2_scaffold_5687_4
unknown

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2171..3367
DNA (1197bp) protein (399aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_5

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3472..4230
DNA (759bp) protein (253aa)
sulfate-transporting ATPase (EC:3.6.3.25)
Putative ABC efflux transporter (ATP-binding protein) n=1 Tax=mine drainage metagenome RepID=E6PH73_9ZZZZ
Putative ABC efflux transporter (ATP-binding protein) {ECO:0000313|EMBL:CBH75811.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metageno
13_1_20cm_2_scaffold_5687_6

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4227..5021
DNA (795bp) protein (265aa)
Putative ABC transporter (Permease) n=1 Tax=mine drainage metagenome RepID=E6Q212_9ZZZZ
Putative ABC transporter (Permease) {ECO:0000313|EMBL:CBI01222.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter
13_1_20cm_2_scaffold_5687_7
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5022..5510)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI00035E46FE
MarR family transcriptional regulator {ECO:0000313|EMBL:EWT01549.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryz
HTH-type transcriptional regulator hpr
13_1_20cm_2_scaffold_5687_8
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5578..6696
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T3I0_AMYOR
Uncharacterized protein {ECO:0000313|EMBL:KFZ81883.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
Conserved putative secreted protein
13_1_20cm_2_scaffold_5687_9
unknown

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comp(6704..6910)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_10

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comp(7036..9270)
DNA (2235bp) protein (745aa)
Type IV secretory pathway VirB4 component-like protein {ECO:0000313|EMBL:KKU19319.1}; TaxID=1618835 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_10.;"
Type IV secretory pathway VirB4 components-like protein alias=gwc1_scaffold_23_394 id=2923369 tax=GWC1_KAZAN_52_13 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown
hypothetical protein
13_1_20cm_2_scaffold_5687_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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comp(9278..9934)
DNA (657bp) protein (219aa)
Flp pilus assembly protein CpaB Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_2_scaffold_5687_12
unknown

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comp(9944..10081)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_13
unknown

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10255..10944
DNA (690bp) protein (230aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_14
unknown

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comp(11157..11630)
DNA (474bp) protein (158aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_15
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11627..12031)
DNA (405bp) protein (135aa)
TadE-like protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PZ11_9FIRM
TadE-like protein {ECO:0000313|EMBL:EKP93804.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerob
13_1_20cm_2_scaffold_5687_16
unknown

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comp(12028..12180)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_2_scaffold_5687_17
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12224..13126)
DNA (903bp) protein (301aa)
Type II secretion system F domain protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XCW3_THEPJ
Type II/IV secretion system protein TadC, associated with Flp pilus assembly {ECO:0000313|EMBL:KHK02258.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; De
bacterial type II secretion system F domain protein
13_1_20cm_2_scaffold_5687_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13123..13983)
DNA (861bp) protein (287aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_2_scaffold_5687_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13971..15281)
DNA (1311bp) protein (437aa)
type II secretion system protein n=1 Tax=Bordetella pertussis RepID=UPI0002DBE487
type II secretion system protein E Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
type 2/4 secretion system protein
13_1_20cm_2_scaffold_5687_20
unknown

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comp(15271..16050)
DNA (780bp) protein (260aa)

This feature has no annotations

Displaying 20 items

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