ggKbase home page

13_1_20cm_2_scaffold_7819

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_7819_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2..277)
DNA (276bp) protein (92aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_2_scaffold_7819_2
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

375..1400
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R2E8_METFO
Uncharacterized protein {ECO:0000313|EMBL:EKF86713.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacte
hypothetical protein
13_1_20cm_2_scaffold_7819_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

1441..2379
DNA (939bp) protein (313aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
nucleoside-diphosphate-sugar epimerases n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C52A8
hypothetical protein
13_1_20cm_2_scaffold_7819_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2366..2821)
DNA (456bp) protein (152aa)
Spore coat polysaccharide biosynthesis protein spsL n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML12_9BACT
spsL; Spore coat polysaccharide biosynthesis protein spsL Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
spsL; Spore coat polysaccharide biosynthesis protein spsL
13_1_20cm_2_scaffold_7819_5
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(2878..3903)
DNA (1026bp) protein (342aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RBG_16_Euryarchaeota_67_27_curated
dTDP-glucose 4,6-dehydratase n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CRX0_METMJ
dTDP-glucose 4,6-dehydratase
13_1_20cm_2_scaffold_7819_6
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

3971..4873
DNA (903bp) protein (301aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] Tax=RBG_16_Euryarchaeota_67_27_curated
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=halophilic archaeon DL31 RepID=G2MQ68_9ARCH
13_1_20cm_2_scaffold_7819_7
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

4870..5943
DNA (1074bp) protein (358aa)
rfbA; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RBG_16_Euryarchaeota_67_27_curated
glucose-1-phosphate thymidyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidyltransferase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D556_METSW
13_1_20cm_2_scaffold_7819_8
unknown

Not on your lists

comp(6271..6726)
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_20cm_2_scaffold_7819_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

6931..7854
DNA (924bp) protein (308aa)
Glycosyl transferase family 2 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G5L1_CHLAD
putative glycosyltransferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
glycosyl transferase family 2 protein
13_1_20cm_2_scaffold_7819_10
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7872..8843)
DNA (972bp) protein (324aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=867904 species="Archae
GDP-mannose 4,6-dehydratase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZN4_METHD
GDP-mannose 4,6-dehydratase
13_1_20cm_2_scaffold_7819_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9009..9515
DNA (507bp) protein (169aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_2_scaffold_7819_12
unknown

Not on your lists

comp(9663..10619)
DNA (957bp) protein (319aa)

This feature has no annotations

13_1_20cm_2_scaffold_7819_13
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10612..11064)
DNA (453bp) protein (151aa)
Type 11 methyltransferase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KU83_9PROT
Type 11 methyltransferase {ECO:0000313|EMBL:EKF09229.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospi
type 11 methyltransferase
13_1_20cm_2_scaffold_7819_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(11569..11793)
DNA (225bp) protein (75aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_2_scaffold_7819_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

11828..15121
DNA (3294bp) protein (1098aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035F4B81
chromosome segregation protein SMC Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
chromosome segregation protein SMC
13_1_20cm_2_scaffold_7819_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

15118..16059
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037998E1
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_20cm_2_scaffold_7819_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16056..16682
DNA (627bp) protein (209aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=mine drainage metagenome RepID=T1BE45_9ZZZZ
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B Tax=RBG_16_Euryarchaeota_68_12_curated
chromosome segregation and condensation protein ScpB
13_1_20cm_2_scaffold_7819_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16773..19118
DNA (2346bp) protein (782aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000377C0CF
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
Displaying 18 items

View Taxonomy