ggKbase home page

13_1_40cm_4_scaffold_14797

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_14797_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(2..319)
DNA (318bp) protein (106aa)
Nitrogenase subunit NifH (ATPase)-like protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0Z1G0_9ZZZZ
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_4_scaffold_14797_2
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(454..1218)
DNA (765bp) protein (255aa)
Alpha/beta hydrolase fold-containing protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UJL4_9CYAN
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:EGK86459.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus va
hypothetical protein
13_1_40cm_4_scaffold_14797_3
Aureococcus anophagefferens, Aureococcus, Pelagomonadales, Pelagophyceae, Eukaryota

Not on your lists

1549..2823
DNA (1275bp) protein (425aa)
Putative uncharacterized protein n=1 Tax=Aureococcus anophagefferens RepID=F0Y584_AURAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGB07925.1}; Flags: Fragment;; TaxID=44056 species="Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus.;" source="Aureococcus anop
PKD domain-containing protein
13_1_40cm_4_scaffold_14797_4
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

3072..3686
DNA (615bp) protein (205aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=RBG_16_Armatimonadetes_67_12_curated
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase id=4638670 bin=GWC2_Pelobacter_58_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
13_1_40cm_4_scaffold_14797_5
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(3748..4428)
DNA (681bp) protein (227aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
Carboxymethylenebutenolidase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TV63_9CHLR
dienelactone hydrolase
13_1_40cm_4_scaffold_14797_6
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(4593..5474)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A07B1
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_4_scaffold_14797_trna_2
unknown

Not on your lists

comp(5582..5654)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_14797_7

Not on your lists

5857..6615
DNA (759bp) protein (253aa)
Transcriptional regulator, MarR family n=1 Tax=mine drainage metagenome RepID=T0ZVI3_9ZZZZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EQD52281.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
HxlR family transcriptional regulator
13_1_40cm_4_scaffold_14797_8
unknown

Not on your lists

comp(6654..7718)
DNA (1065bp) protein (355aa)

This feature has no annotations

13_1_40cm_4_scaffold_14797_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7847..9301)
DNA (1455bp) protein (485aa)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036B7881
amidophosphoribosyltransferase
13_1_40cm_4_scaffold_14797_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9429..9596)
DNA (168bp) protein (56aa)
50S ribosomal protein L37e n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=RL37_ARCFU
rpl37e; 50S ribosomal protein L37e; K02922 large subunit ribosomal protein L37e Tax=RBG_16_Euryarchaeota_68_12_curated
Ribosomal protein L37E
13_1_40cm_4_scaffold_14797_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9607..9822)
DNA (216bp) protein (72aa)
Small nuclear ribonucleoprotein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T4A5_9EURY
small nuclear ribonucleoprotein Tax=RBG_16_Euryarchaeota_68_12_curated
small nuclear ribonucleoprotein
13_1_40cm_4_scaffold_14797_12
unknown

Not on your lists

10042..10257
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_14797_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

10280..10708
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI000369691A
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_14797_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

10856..11794
DNA (939bp) protein (313aa)
Aldo/keto reductase n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0LX50_9EURY
aldo/keto reductase Tax=RBG_16_Euryarchaeota_68_12_curated
aldo/keto reductase
13_1_40cm_4_scaffold_14797_15
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11798..12361)
DNA (564bp) protein (188aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_4_scaffold_14797_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12671..13438
DNA (768bp) protein (256aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_16_Euryarchaeota_68_12_curated
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Geobacillus thermoleovorans CCB_US3_UF5 RepID=G8N184_GEOTH
3-oxoacyl-ACP reductase
13_1_40cm_4_scaffold_14797_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13441..13695)
DNA (255bp) protein (85aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_14797_18
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13895..14617
DNA (723bp) protein (241aa)
Methyltransferase type 11 n=7 Tax=Clostridium thermocellum RepID=E6UQ60_CLOTL
Methyltransferase type 11 {ECO:0000313|EMBL:GAE88645.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisol
type 11 methyltransferase
13_1_40cm_4_scaffold_14797_trna_1
unknown

Not on your lists

comp(14599..14671)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_14797_19
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14763..15671)
DNA (909bp) protein (303aa)
PBS lyase {ECO:0000313|EMBL:KFA88171.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter viol
TPR-repeat protein
13_1_40cm_4_scaffold_14797_20
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(15931..16329)
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBF7_ACIB4
archaeal ribosomal protein S9P Tax=RBG_16_Euryarchaeota_67_27_curated
30S ribosomal protein S9
13_1_40cm_4_scaffold_14797_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


comp(16326..16736)
DNA (411bp) protein (137aa)
50S ribosomal protein L13 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T6E8_9EURY
50S ribosomal protein L13 Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L13Ae (L13p)
13_1_40cm_4_scaffold_14797_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


comp(16741..17103)
DNA (363bp) protein (121aa)
50S ribosomal protein L18e n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBF5_ACIB4
50S ribosomal protein L13 Tax=RBG_16_Euryarchaeota_68_12_curated
ribosomal protein L15
13_1_40cm_4_scaffold_14797_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

17299..17967
DNA (669bp) protein (223aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TB69_9EURY
Xylose isomerase domain protein TIM barrel Tax=RBG_16_Euryarchaeota_68_12_curated
Xylose isomerase domain protein TIM barrel
Displaying 25 items

View Taxonomy