ggKbase home page

13_1_40cm_4_scaffold_17056

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_17056_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3..263)
DNA (261bp) protein (87aa)
UDP diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8C0_9EURY
undecaprenyl diphosphate synthase
13_1_40cm_4_scaffold_17056_2
unknown

Not on your lists

comp(376..549)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_4_scaffold_17056_3
unknown

Not on your lists

comp(587..865)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_17056_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

983..1261
DNA (279bp) protein (93aa)
Regulatory protein ArsR n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TBG2_METSL
regulatory protein ArsR Tax=RBG_16_Euryarchaeota_68_12_curated
regulatory protein ArsR
13_1_40cm_4_scaffold_17056_5

Not on your lists

1304..1603
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49869.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Uncharacterized protein id=5048646 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
13_1_40cm_4_scaffold_17056_6
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(1590..2012)
DNA (423bp) protein (141aa)
Tax=RBG_16_Chloroflexi_54_18_curated
13_1_40cm_4_scaffold_17056_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2155..3003
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003718A44
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_17056_8
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3051..4265
DNA (1215bp) protein (405aa)
Kef-type K+ transport system, membrane component n=1 Tax=Beggiatoa alba B18LD RepID=I3CFY2_9GAMM
sodium/proton antiporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=GWF2_Verrucomicrobia_62_7_curated
potassium transporter
13_1_40cm_4_scaffold_17056_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4280..4513
DNA (234bp) protein (78aa)
Translation initiation factor 1A n=2 Tax=Euryarchaeota RepID=M9SFS3_9EURY
translation initiation factor 1A (aeIF-1A) Tax=RBG_16_Euryarchaeota_68_12_curated
translation initiation factor IF-1
13_1_40cm_4_scaffold_17056_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

4740..5042
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Thermus thermophilus JL-18 RepID=H9ZUM7_THETH
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_4_scaffold_17056_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5677..6204
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003467820
PKD domain-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
microbial collagenase
13_1_40cm_4_scaffold_17056_12
unknown

Not on your lists

comp(6398..6643)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_4_scaffold_17056_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6939..7703
DNA (765bp) protein (255aa)
RIO-like kinase; K07178 RIO kinase 1 [EC:2.7.11.1] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037337F6
RIO-like kinase
13_1_40cm_4_scaffold_17056_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7707..8774)
DNA (1068bp) protein (356aa)
lysK; acetyl-lysine deacetylase (EC:3.5.1.-); K05831 LysW-gamma-L-lysine carboxypeptidase Tax=RBG_16_Euryarchaeota_68_12_curated
N-acetyl-ornithine/N-acetyl-lysine deacetylase n=1 Tax=mine drainage metagenome RepID=T0Z6F1_9ZZZZ
N-acetyl-ornithine/N-acetyl-lysine deacetylase
13_1_40cm_4_scaffold_17056_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8767..9915)
DNA (1149bp) protein (383aa)
acetylornithine aminotransferase; K05830 acetylornithine/LysW-gamma-L-lysine aminotransferase [EC:2.6.1.11 2.6.1.-] Tax=RBG_16_Euryarchaeota_68_12_curated
Acetylornithine aminotransferase id=2282495 bin=GWB2_Chloroflexi_54_36 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
acetylornithine and succinylornithine aminotransferase
13_1_40cm_4_scaffold_17056_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9921..10277)
DNA (357bp) protein (119aa)
acetylglutamate kinase (EC:2.7.2.8); K05828 acetylglutamate/LysW-gamma-L-alpha-aminoadipate kinase [EC:2.7.2.8 2.7.2.-] Tax=RBG_16_Euryarchaeota_68_12_curated
N-acetylglutamate kinase n=1 Tax=mine drainage metagenome RepID=T1CIJ2_9ZZZZ
n2-acetyl-l-aminoadipate kinase; N-acetylglutamate kinase
Displaying 16 items

View Taxonomy