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13_1_40cm_4_scaffold_20662

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_20662_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(1..1140)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037CA9D9
nicotinate phosphoribosyltransferase Tax=RBG_16_Euryarchaeota_67_27_curated
nicotinate phosphoribosyltransferase
13_1_40cm_4_scaffold_20662_2
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1443..1904)
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPU6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN46984.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacter
13_1_40cm_4_scaffold_20662_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(2317..3390)
DNA (1074bp) protein (358aa)
acetylornithine deacetylase (EC:3.5.1.16) Tax=RBG_16_Euryarchaeota_67_27_curated
acetylornithine deacetylase (EC:3.5.1.16)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (Fragment) n=2 Tax=mine drainage metagenome RepID=T1BRT2_9ZZZZ
13_1_40cm_4_scaffold_20662_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(3484..3831)
DNA (348bp) protein (116aa)
UPI0003D1C2A8 related cluster n=1 Tax=unknown RepID=UPI0003D1C2A8
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_4_scaffold_20662_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(4174..4746)
DNA (573bp) protein (191aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
A/G-specific adenine glycosylase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJJ2_THEM7
A/G-specific adenine glycosylase
13_1_40cm_4_scaffold_20662_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(5110..5793)
DNA (684bp) protein (228aa)
DNA-(Apurinic or apyrimidinic site) lyase; K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=5040692 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
DNA-(Apurinic or apyrimidinic site) lyase
13_1_40cm_4_scaffold_20662_7
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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5800..6423
DNA (624bp) protein (208aa)
putative nickel-containing superoxide dismutase (EC:1.15.1.1)
Putative nickel-containing superoxide dismutase n=1 Tax=Polaribacter irgensii 23-P RepID=A4C131_9FLAO id=72002 bin=ACD50 species=Polaribacter irgensii genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
nickel-dependent superoxide dismutase Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_4_scaffold_20662_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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6439..6744
DNA (306bp) protein (102aa)
nickel-type superoxide dismutase maturation protease Tax=RBG_16_Euryarchaeota_68_12_curated
nickel-type superoxide dismutase maturation protease id=14630163 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin8_Chloro organism_group=Chloroflexi
nickel-type superoxide dismutase maturation protease
13_1_40cm_4_scaffold_20662_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(6751..7545)
DNA (795bp) protein (265aa)
oxidoreductase FAD/NAD(P)-binding; K03380 phenol 2-monooxygenase [EC:1.14.13.7] Tax=RBG_16_Euryarchaeota_68_13_curated
Oxidoreductase FAD/NAD(P)-binding protein id=3079203 bin=GWA2_OP3_52_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
oxidoreductase FAD/NAD(P)-binding protein
13_1_40cm_4_scaffold_20662_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(7643..8344)
DNA (702bp) protein (234aa)
MIP family channel protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBS8_9CHLR
MIP family channel protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
MIP family channel protein
13_1_40cm_4_scaffold_20662_11
unknown

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9021..9311
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_4_scaffold_20662_12
unknown

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9316..9534
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_4_scaffold_20662_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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9719..10126
DNA (408bp) protein (136aa)
Putative nickel-responsive regulator n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6T2F8_9EURY
Nickel responsive regulator NikR; K07722 CopG family transcriptional regulator, nickel-responsive regulator Tax=RBG_16_Euryarchaeota_67_27_curated
transcription nickel responsive regulator, CopG family
13_1_40cm_4_scaffold_20662_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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10224..10670
DNA (447bp) protein (149aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_4_scaffold_20662_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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10873..11526
DNA (654bp) protein (218aa)
Proline dehydrogenase n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKF9_9ARCH
proline dehydrogenase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
proline dehydrogenase
13_1_40cm_4_scaffold_20662_16
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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11613..12257
DNA (645bp) protein (215aa)
Predicted EndoIII-related endonuclease (EC:4.2.99.18) Tax=RBG_16_Euryarchaeota_68_13_curated
DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B6Q0_ACIHW
DNA-(apurinic or apyrimidinic site) lyase
13_1_40cm_4_scaffold_20662_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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12293..13162
DNA (870bp) protein (290aa)
ctaB2; protoheme IX farnesyltransferase (EC:2.5.1.-) Tax=RBG_16_Euryarchaeota_68_13_curated
ctaB2; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIG5_NITGG
13_1_40cm_4_scaffold_20662_18
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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13327..13734
DNA (408bp) protein (136aa)
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RBG_16_Euryarchaeota_67_27_curated
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.1)
Citrate synthase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WSL5_KYRT2
Displaying 18 items

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