ggKbase home page

13_1_40cm_4_scaffold_4060

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4060_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..747)
DNA (747bp) protein (249aa)
acetylornithine deacetylase (EC:3.5.1.16) Tax=RBG_16_Euryarchaeota_68_12_curated
acetylornithine deacetylase (EC:3.5.1.16)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (Fragment) n=2 Tax=mine drainage metagenome RepID=T1BRT2_9ZZZZ
13_1_40cm_4_scaffold_4060_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(744..1328)
DNA (585bp) protein (195aa)
trmY; tRNA (pseudouridine(54)-N(1))-methyltransferase (EC:2.1.1.257)
tRNA (pseudouridine(54)-N(1))-methyltransferase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=TRMY_UNCMA
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_4060_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1374..1544)
DNA (171bp) protein (57aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_4060_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1586..2140)
DNA (555bp) protein (185aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] Tax=RBG_16_Euryarchaeota_68_12_curated
mutY; A/G-specific adenine glycosylase MutY (EC:3.2.2.-)
A/G-specific adenine glycosylase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TWB6_DESML
13_1_40cm_4_scaffold_4060_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2647..3210)
DNA (564bp) protein (188aa)
DNA-(Apurinic or apyrimidinic site) lyase; K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=RBG_16_Euryarchaeota_68_12_curated
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=5040692 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
thermostable 8-oxoguanine DNA glycosylase
13_1_40cm_4_scaffold_4060_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

3448..3969
DNA (522bp) protein (174aa)
putative nickel-containing superoxide dismutase (EC:1.15.1.1)
Putative nickel-containing superoxide dismutase n=1 Tax=Polaribacter irgensii 23-P RepID=A4C131_9FLAO id=72002 bin=ACD50 species=Polaribacter irgensii genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
nickel-dependent superoxide dismutase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_4_scaffold_4060_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4023..4310
DNA (288bp) protein (96aa)
nickel-type superoxide dismutase maturation protease Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
nickel-type superoxide dismutase maturation protease id=14630163 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_4_scaffold_4060_8
RBG_13_Euryarchaeota_61_15_curated, Euryarchaeota, Archaea

Not on your lists

4374..5969
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036A84E5
Na+/solute symporter Tax=RBG_13_Euryarchaeota_61_15_curated
hypothetical protein
13_1_40cm_4_scaffold_4060_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5974..6777)
DNA (804bp) protein (268aa)
oxidoreductase FAD/NAD(P)-binding; K03380 phenol 2-monooxygenase [EC:1.14.13.7] Tax=RBG_16_Euryarchaeota_68_12_curated
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT05_KORVE
oxidoreductase FAD/NAD(P)-binding protein
13_1_40cm_4_scaffold_4060_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6880..7560)
DNA (681bp) protein (227aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI00037EF1C0
MIP family channel protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
tonoplast intrinsic protein (Aquaporin)
13_1_40cm_4_scaffold_4060_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7645..8124)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036DA4D7
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_4060_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8185..8916)
DNA (732bp) protein (244aa)
protein UreH Tax=RBG_16_Euryarchaeota_68_12_curated
high-affinity nickel-transporter id=5045818 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
high-affinity nickel-transporter protein
13_1_40cm_4_scaffold_4060_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9022..9429
DNA (408bp) protein (136aa)
Putative nickel-responsive regulator n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6T2F8_9EURY
nickel responsive regulator; K07722 CopG family transcriptional regulator, nickel-responsive regulator Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
nikR; nickel responsive regulator
13_1_40cm_4_scaffold_4060_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

9511..9678
DNA (168bp) protein (56aa)
proline dehydrogenase (EC:1.5.99.8) Tax=RBG_16_Euryarchaeota_68_12_curated
Proline dehydrogenase
Displaying 14 items

View Taxonomy