ggKbase home page

13_1_40cm_4_scaffold_4827

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4827_1
unknown

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_2
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(224..628)
DNA (405bp) protein (135aa)
Putative nickel-responsive regulator n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0D4X7_9EURY
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeome
transcriptional regulator
13_1_40cm_4_scaffold_4827_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

836..1735
DNA (900bp) protein (300aa)
ABC-type metal ion transporter, periplasmic subunit id=4161333 bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heavy metal ABC transporter substrate-binding protein; K09815 zinc transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
LraI; ABC-type metal ion transport system, periplasmic component/surface adhesin
13_1_40cm_4_scaffold_4827_4
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

1732..2544
DNA (813bp) protein (271aa)
ABC transporter ATP-binding protein; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] id=14631712 bin=bin9_gal15 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
ABC transporter ATP-binding protein; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=CSP1_3_Armatimonadetes
polyamine-transporting ATPase (EC:3.6.3.31)
13_1_40cm_4_scaffold_4827_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2553..3407
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000379FE56
ABC-type Mn2+/Zn2+ transport system, permease component {ECO:0000313|EMBL:KCZ73162.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae
Mn2+/Zn2+ ABC transporter permease
13_1_40cm_4_scaffold_4827_6
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3426..4154
DNA (729bp) protein (243aa)
putative uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:BAP87417.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Putative uncharacterized protein id=3895114 bin=GWC2_Nitrospirae_57_13 species=Chamaesiphon minutus genus=Chamaesiphon taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
13_1_40cm_4_scaffold_4827_7
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4170..4967)
DNA (798bp) protein (266aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LM92_HALO1
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KFA86985.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_4827_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5019..5381)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2N2E0_9ACTO
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_4827_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(5424..5975)
DNA (552bp) protein (184aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_4_scaffold_4827_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(6033..6317)
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_4_scaffold_4827_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6367..6678)
DNA (312bp) protein (104aa)
Putative transcriptional regulator n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6T2B9_9EURY
regulatory protein ArsR Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
regulatory protein ArsR
13_1_40cm_4_scaffold_4827_12
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(6728..7561)
DNA (834bp) protein (278aa)
Probable lipoprotein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z609_FLABF
putative lipoprotein
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_4_scaffold_4827_13
unknown

Not on your lists

7773..8198
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_14
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(8435..8878)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFR1_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
transposase
13_1_40cm_4_scaffold_4827_15
unknown

Not on your lists

8902..9324
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_16
unknown

Not on your lists

comp(9372..9800)
DNA (429bp) protein (143aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_17
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(9946..10653)
DNA (708bp) protein (236aa)
Membrane protein containing DUF125, transmembrane n=1 Tax=mine drainage metagenome RepID=T1CPE7_9ZZZZ
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_4_scaffold_4827_18
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

10735..10965
DNA (231bp) protein (77aa)
50S ribosomal protein L40e n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YU79_9EURY
ribosomal protein L40E Tax=RBG_16_Euryarchaeota_68_13_curated
LSU ribosomal protein L40E
13_1_40cm_4_scaffold_4827_19
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11106..12428
DNA (1323bp) protein (441aa)
Pyrrolo-quinoline quinone n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RD00_METP4
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ADN35900.1}; Flags: Precursor;; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" so
13_1_40cm_4_scaffold_4827_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12504..12803)
DNA (300bp) protein (100aa)
Transcription regulator AbrB/SpoV, predicted Tax=RBG_16_Euryarchaeota_68_12_curated
Transcription regulator AbrB/SpoV, predicted id=5041830 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
13_1_40cm_4_scaffold_4827_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12844..13089)
DNA (246bp) protein (82aa)
id=5041829 Tax=RBG_16_Euryarchaeota_68_12_curated
id=5041829 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
13_1_40cm_4_scaffold_4827_22
unknown

Not on your lists

13334..13633
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_23
unknown

Not on your lists

13808..14140
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_40cm_4_scaffold_4827_24
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(14559..14786)
DNA (228bp) protein (76aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_4_scaffold_4827_25
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

15352..15489
DNA (138bp) protein (46aa)
Transcription factor n=1 Tax=mine drainage metagenome RepID=T0YLT1_9ZZZZ
transcription factor Tax=RBG_16_Euryarchaeota_68_13_curated
transcription factor
Displaying 25 items

View Taxonomy