ggKbase home page

13_1_40cm_4_scaffold_6931

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6931_1
unknown

Not on your lists

comp(3..566)
DNA (564bp) protein (188aa)

This feature has no annotations

13_1_40cm_4_scaffold_6931_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(589..1623)
DNA (1035bp) protein (345aa)
bifunctional phosphoglucose/phosphomannose isomerase; K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RBG_16_Euryarchaeota_68_12_curated
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9Y2_9EURY
bifunctional phosphoglucose/phosphomannose isomerase
13_1_40cm_4_scaffold_6931_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

1753..2457
DNA (705bp) protein (235aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K02858 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] Tax=RBG_16_Euryarchaeota_68_12_curated
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003741C0A
13_1_40cm_4_scaffold_6931_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2457..2918
DNA (462bp) protein (154aa)
FAD synthase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HME3_ACIS0
cytidyltransferase-related enzyme Tax=RBG_16_Euryarchaeota_68_12_curated
cytidyltransferase-related enzyme
13_1_40cm_4_scaffold_6931_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2931..3401
DNA (471bp) protein (157aa)
riboflavin synthase alpha chain (EC:2.5.1.-) Tax=RBG_16_Euryarchaeota_68_12_curated
ribC; riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IC31_ACIB4
13_1_40cm_4_scaffold_6931_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

3404..3823
DNA (420bp) protein (140aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_16_Euryarchaeota_68_12_curated
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RISB_METKA
ribH; 6,7-dimethyl-8-ribityllumazine synthase
13_1_40cm_4_scaffold_6931_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

3922..4281
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000360600D
Roadblock/LC7 family protein; K07131 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Roadblock/LC7 family protein
13_1_40cm_4_scaffold_6931_8
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

4356..4820
DNA (465bp) protein (155aa)
Roadblock/LC7 family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ29_ARCVS
Roadblock/LC7 family protein; K07131 Tax=RBG_16_Euryarchaeota_68_13_curated
Roadblock/LC7 family protein
13_1_40cm_4_scaffold_6931_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4817..5470)
DNA (654bp) protein (218aa)
Methionine--tRNA ligase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY
Suspect SCG annotation. See neighboring gene [13_1_40cm_4_scaffold_6931_10].
methionyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
methionyl-tRNA synthetase
13_1_40cm_4_scaffold_6931_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


comp(5409..6941)
DNA (1533bp) protein (511aa)
Methionine--tRNA ligase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY
methionyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
methionyl-tRNA synthetase
13_1_40cm_4_scaffold_6931_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7030..8787)
DNA (1758bp) protein (586aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_6931_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8823..9815)
DNA (993bp) protein (331aa)
DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RBG_16_Euryarchaeota_68_12_curated
DNA ligase, putative n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28549_ARCFU
DNA ligase
13_1_40cm_4_scaffold_6931_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9822..10598)
DNA (777bp) protein (259aa)
Probable DNA repair protein Toce_0248 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0A6_THEOJ
DNA end-binding protein Ku; K10979 DNA end-binding protein Ku Tax=RBG_16_Euryarchaeota_68_12_curated
DNA end-binding protein Ku
13_1_40cm_4_scaffold_6931_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(10700..11134)
DNA (435bp) protein (145aa)
Ferredoxin n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Q4_9ARCH
ferredoxin Tax=RBG_16_Euryarchaeota_67_27_curated
ferredoxin
13_1_40cm_4_scaffold_6931_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

11383..11607
DNA (225bp) protein (75aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_6931_16
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

11724..12128
DNA (405bp) protein (135aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_4_scaffold_6931_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12254..12475
DNA (222bp) protein (74aa)
Putative RNA-binding protein, contains TRAM domain n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZJ4_METHD
putative RNA-binding protein, contains TRAM domain Tax=RBG_16_Euryarchaeota_68_12_curated
putative RNA-binding protein, contains TRAM domain
13_1_40cm_4_scaffold_6931_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12603..13607
DNA (1005bp) protein (335aa)
Marine sediment metagenome DNA, contig: S03H2_S08248 Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_6931_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

13660..13923
DNA (264bp) protein (88aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_6931_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

13939..14484
DNA (546bp) protein (182aa)
Transcriptional regulator, ArsR family n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S382_FERPA
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
ArsR family transcriptional regulator
13_1_40cm_4_scaffold_6931_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(14500..15120)
DNA (621bp) protein (207aa)
Putative GAF sensor protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C712_SPHTD
putative GAF sensor protein; K07170 GAF domain-containing protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
putative GAF sensor protein
13_1_40cm_4_scaffold_6931_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(15407..16048)
DNA (642bp) protein (214aa)
purN; phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RBG_16_Euryarchaeota_68_12_curated
Phosphoribosylglycinamide formyltransferase n=1 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2V455_9FIRM
purN; phosphoribosylglycinamide formyltransferase, folate-dependent
13_1_40cm_4_scaffold_6931_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(16057..17589)
DNA (1533bp) protein (511aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EL26_9FIRM
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
13_1_40cm_4_scaffold_6931_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(17623..18573)
DNA (951bp) protein (317aa)
methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037102BE
methylenetetrahydrofolate reductase
13_1_40cm_4_scaffold_6931_25
unknown

Not on your lists

18667..19335
DNA (669bp) protein (223aa)

This feature has no annotations

13_1_40cm_4_scaffold_6931_26
unknown

Not on your lists

19332..19439
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_6931_27
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19427..20515)
DNA (1089bp) protein (363aa)
Digeranylgeranylglycerophospholipid reductase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TBI3_METSL
digeranylgeranylglycerophospholipid reductase Tax=RBG_16_Euryarchaeota_68_12_curated
digeranylgeranylglycerophospholipid reductase
13_1_40cm_4_scaffold_6931_28
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(20816..21409)
DNA (594bp) protein (198aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_6931_29
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

21425..22306
DNA (882bp) protein (294aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9) Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CDF9E
folD; bifunctional protein FolD protein
13_1_40cm_4_scaffold_6931_30
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(22530..23099)
DNA (570bp) protein (190aa)
Predicted protein n=1 Tax=Streptomyces sp. C RepID=D9W0F6_9ACTO
collagen triple helix repeat-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
collagen
Displaying 30 items

View Taxonomy