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13_1_20cm_3_scaffold_1177

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1177_1
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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3..242
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Streptomyces chartreusis RepID=UPI000262EB50
Uncharacterized protein {ECO:0000313|EMBL:ADI05045.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain
hypothetical protein
13_1_20cm_3_scaffold_1177_2
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(286..1134)
DNA (849bp) protein (283aa)
DNA repair protein n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6VZG1_9ALTE
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=626887 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source=
Ku domain-containing protein
13_1_20cm_3_scaffold_1177_3
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1189..1974)
DNA (786bp) protein (262aa)
Ku protein n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6WWT0_9ALTE
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=626887 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source=
DNA end-binding protein Ku
13_1_20cm_3_scaffold_1177_4
Lactococcus raffinolactis, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(2173..2412)
DNA (240bp) protein (80aa)
Translation initiation factor IF-1 n=1 Tax=Lactococcus raffinolactis 4877 RepID=I7KH97_9LACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1215915 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus raffin
infA; translation initiation factor IF-1
13_1_20cm_3_scaffold_1177_5
unknown

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comp(2432..2668)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_6

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comp(2699..3583)
DNA (885bp) protein (295aa)
Delta-9 acyl-phospholipid desaturase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035C0EBC
Fatty acid desaturase {ECO:0000313|EMBL:AIA12259.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Delta-9 acyl-phospholipid desaturase
13_1_20cm_3_scaffold_1177_7
unknown

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comp(3599..3850)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_8
unknown

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3880..4083
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_9
Bifidobacterium minimum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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4498..4710
DNA (213bp) protein (71aa)
Cro/Cl family transcriptional regulator n=1 Tax=Bifidobacterium minimum RepID=UPI0003B7AA54
Transcriptional regulator {ECO:0000313|EMBL:KFI72115.1}; TaxID=1693 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium minimum.;"
13_1_20cm_3_scaffold_1177_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4814..6307
DNA (1494bp) protein (498aa)
Fe-S oxidoreductase {ECO:0000313|EMBL:CDM65990.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Radical SAM domain protein id=2248641 bin=GWA2_Deltaproteo_65_63 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Fe-S oxidoreductase
13_1_20cm_3_scaffold_1177_11
unknown

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comp(6304..6648)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_12
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6825..7211)
DNA (387bp) protein (129aa)
RNP-1 like RNA-binding protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LED5_SYNFM
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:ABK15787.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source=
RNP-1 like RNA-binding protein
13_1_20cm_3_scaffold_1177_13
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(7543..8181)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI000313224D
Flavin-nucleotide-binding protein {ECO:0000313|EMBL:KIJ84531.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.
flavin-nucleotide-binding protein
13_1_20cm_3_scaffold_1177_14
unknown

Not on your lists

8203..8394
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_15
unknown

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comp(8348..8920)
DNA (573bp) protein (191aa)

This feature has no annotations

13_1_20cm_3_scaffold_1177_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9255..9749
DNA (495bp) protein (165aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24462126 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_20cm_3_scaffold_1177_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9842..10825
DNA (984bp) protein (328aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};;
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] id=14627693 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
13_1_20cm_3_scaffold_1177_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(11149..12606)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003713820
NHL repeat-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
Displaying 18 items

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