ggKbase home page

13_1_20cm_3_scaffold_1274

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1274_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

3..491
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003614559
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABF40357.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter ve
LysR family transcriptional regulator
13_1_20cm_3_scaffold_1274_2
R_OP11_Gottesmanbacteria_39_11, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

675..1916
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000379E30A
PAS domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_11_curated
PAS domain-containing protein
13_1_20cm_3_scaffold_1274_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1949..4228
DNA (2280bp) protein (760aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" so
Multi-sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVI8_9BACT rbh
PAS/PAC sensor signal transduction histidine kinase
13_1_20cm_3_scaffold_1274_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

4225..4704
DNA (480bp) protein (160aa)
Response regulator receiver protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XDL2_9CHRO
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
response regulator receiver protein
13_1_20cm_3_scaffold_1274_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

4701..5900
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034C5E43
PAS sensor protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PAS sensor protein
13_1_20cm_3_scaffold_1274_6
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5866..6294
DNA (429bp) protein (143aa)
Response regulator receiver protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRA7_HALO1
Response regulator receiver protein {ECO:0000313|EMBL:ACY17135.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source
response regulator receiver protein
13_1_20cm_3_scaffold_1274_7
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6302..7897
DNA (1596bp) protein (532aa)
Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NLS7_9DELT
response regulator receiver sensor hybrid histidine kinase Tax=RBG_13_Deltaproteobacteria_53_10_curated
ATP-binding region ATPase domain protein
13_1_20cm_3_scaffold_1274_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7887..8324
DNA (438bp) protein (146aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02854.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
response regulator receiver protein id=24458846 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
turgor pressure regulator
13_1_20cm_3_scaffold_1274_9
unknown

Not on your lists

8350..8742
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_20cm_3_scaffold_1274_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8863..10659
DNA (1797bp) protein (599aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:ABF41472.1}; EC=1.3.8.1 {ECO:0000313|EMBL:ABF41472.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Korib
Butyryl-CoA dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INS8_KORVE rbh
butyryl-CoA dehydrogenase
13_1_20cm_3_scaffold_1274_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10708..11733
DNA (1026bp) protein (342aa)
Alpha/beta hydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUF6_KORVE rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:ABF39494.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
Alpha/beta hydrolase
13_1_20cm_3_scaffold_1274_12
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(11751..13256)
DNA (1506bp) protein (502aa)
Putative uncharacterized protein n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4AVC7_MARSH
periplasmic component of the Tol biopolymer transport system-like protein Tax=RBG_13_Planctomycetes_50_24_curated
hypothetical protein
13_1_20cm_3_scaffold_1274_trna_1
unknown

Not on your lists

13399..13472
DNA (74bp)
transferRNA
13_1_20cm_3_scaffold_1274_13
unknown

Not on your lists

13989..14519
DNA (531bp) protein (177aa)

This feature has no annotations

13_1_20cm_3_scaffold_1274_14
unknown

Not on your lists

14711..14974
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_20cm_3_scaffold_1274_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14992..16110
DNA (1119bp) protein (373aa)
Type IV pilus assembly PilZ n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILV3_KORVE
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ABF42147.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (s
type IV pilus assembly PilZ
13_1_20cm_3_scaffold_1274_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16130..16984)
DNA (855bp) protein (285aa)
Putative thiol-disulfide isomerase and thioredoxin n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKD1_KORVE
Putative thiol-disulfide isomerase and thioredoxin {ECO:0000313|EMBL:ABF42669.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Kori
thiol-disulfide isomerase and thioredoxin
Displaying 17 items

View Taxonomy