ggKbase home page

13_1_20cm_3_scaffold_1446

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1446_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(2..610)
DNA (609bp) protein (203aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8I3_CONWI
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADB50947.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacte
LuxR family transcriptional regulator
13_1_20cm_3_scaffold_1446_2
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(622..1590)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0002EC7F80
Cell wall-binding protein {ECO:0000313|EMBL:CDL91920.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETG
3D domain-containing protein
13_1_20cm_3_scaffold_1446_3
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1849..3069
DNA (1221bp) protein (407aa)
NlpC/P60 family protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T1W6_CLOSG
nlp/P60 family protein Tax=RBG_16_Actinobacteria_67_10_curated
NlpC/P60 family protein
13_1_20cm_3_scaffold_1446_4
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3032..3808)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QIA5_CATAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU74982.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora ac
hypothetical protein
13_1_20cm_3_scaffold_1446_5
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3763..5469)
DNA (1707bp) protein (569aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=CG_Delta_02
AMP-dependent synthetase and ligase id=2246836 bin=GWB2_Deltaproteobacteria_65_81 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
AMP-dependent synthetase and ligase
13_1_20cm_3_scaffold_1446_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

5880..6068
DNA (189bp) protein (63aa)
Cupin 2, conserved barrel n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXM7_RUBXD
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABG03851.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubr
cupin 2 barrel domain-containing protein
13_1_20cm_3_scaffold_1446_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6132..7019
DNA (888bp) protein (296aa)
Probable DNA repair protein J416_02589 n=1 Tax=Gracilibacillus halophilus YIM-C55.5 RepID=N4WFF7_9BACI
Ku protein; K10979 DNA end-binding protein Ku Tax=RBG_16_Actinobacteria_67_10_curated
Ku protein
13_1_20cm_3_scaffold_1446_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7029..7196)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYU4_CONWI
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
13_1_20cm_3_scaffold_1446_9
Mycobacterium indicus pranii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7398..8207
DNA (810bp) protein (270aa)
AB hydrolase superfamily protein yisY n=2 Tax=Mycobacterium RepID=J9WD07_9MYCO
AB hydrolase superfamily protein yisY {ECO:0000313|EMBL:AFS14880.1}; TaxID=1232724 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (M
AB hydrolase superfamily protein yisY
13_1_20cm_3_scaffold_1446_10
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8166..8516)
DNA (351bp) protein (117aa)
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=84022 species="Bacteria; Firmicutes; Clostridi
single-strand binding protein id=4827935 bin=GWC2_TM7_48_9 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
single-strand binding protein
13_1_20cm_3_scaffold_1446_trna_1
unknown

Not on your lists

8607..8680
DNA (74bp)
transferRNA
13_1_20cm_3_scaffold_1446_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(8747..9262)
DNA (516bp) protein (172aa)
DoxX family protein n=1 Tax=Williamsia sp. D3 RepID=V8D3L3_9ACTO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
oxidoreductase
13_1_20cm_3_scaffold_1446_12
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(9292..10491)
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTY2_9CHLR
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFH83883.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedono
major facilitator superfamily protein
13_1_20cm_3_scaffold_1446_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10515..11351
DNA (837bp) protein (279aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F052_CONWI
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ADB50028.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae;
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
13_1_20cm_3_scaffold_1446_14
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11333..12172
DNA (840bp) protein (280aa)
Aminoglycoside/hydroxyurea antibiotic resistance kinase {ECO:0000313|EMBL:CCH21079.1}; EC=2.7.1.72 {ECO:0000313|EMBL:CCH21079.1};; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; M
Aminoglycoside/hydroxyurea antibiotic resistance kinase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB82_9ACTO
aminoglycoside/hydroxyurea antibiotic resistance kinase
13_1_20cm_3_scaffold_1446_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

12169..12855
DNA (687bp) protein (229aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E Tax=RBG_16_Actinobacteria_68_12_curated
HDHD3; haloacid dehalogenase-like hydrolase domain-containing protein 3 isoform 1 id=12556572 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
haloacid dehalogenase
13_1_20cm_3_scaffold_1446_16
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12868..13296
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Nocardiopsis gilva RepID=UPI0003468C11
Membrane protein {ECO:0000313|EMBL:KIH96925.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
hypothetical protein
13_1_20cm_3_scaffold_1446_17
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13309..14196
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RNW7_FRAAA rbh
SPFH domain, Band 7 family protein {ECO:0000313|EMBL:KJE24752.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein rbh
13_1_20cm_3_scaffold_1446_18
unknown

Not on your lists

comp(14193..15026)
DNA (834bp) protein (278aa)
hypothetical protein
13_1_20cm_3_scaffold_1446_19
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(15059..15913)
DNA (855bp) protein (285aa)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Geobacillus RepID=C9S0I5_GEOSY
L-carnitine dehydratase/bile acid-inducible protein F Tax=RBG_16_Actinobacteria_68_12_curated
L-carnitine dehydratase/bile acid-inducible protein F
13_1_20cm_3_scaffold_1446_20
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

15942..16571
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F053_CONWI
TetR family transcriptional regulator Tax=RBG_16_Actinobacteria_68_12_curated
TetR family transcriptional regulator
13_1_20cm_3_scaffold_1446_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

16576..17541
DNA (966bp) protein (322aa)
Major facilitator superfamily MFS_1 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEZ0_CONWI
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADB51707.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Cone
major facilitator superfamily protein
Displaying 22 items

View Taxonomy