ggKbase home page

13_1_20cm_3_scaffold_3004

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_3004_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1..630
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000376C9AB
Uncharacterized protein {ECO:0000313|EMBL:ACB75096.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-
hypothetical protein
13_1_20cm_3_scaffold_3004_2
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(659..1231)
DNA (573bp) protein (191aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isom
phosphoheptose isomerase (EC:5.3.1.-)
Phosphoheptose isomerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZP7_9BACT
13_1_20cm_3_scaffold_3004_3
unknown

Not on your lists

comp(1415..1804)
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_20cm_3_scaffold_3004_4
unknown

Not on your lists

1852..2175
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_20cm_3_scaffold_3004_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2200..3600
DNA (1401bp) protein (467aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W82_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ABJ86083.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
hypothetical protein
13_1_20cm_3_scaffold_3004_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3801..4973)
DNA (1173bp) protein (391aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD3_9BACT
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF57957.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivisi
sigma factor, ECF subfamily protein
13_1_20cm_3_scaffold_3004_7
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4978..5490)
DNA (513bp) protein (171aa)
hypothetical protein Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
Uncharacterized protein id=2901546 bin=GWF2_Melioribacter_38_21 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
13_1_20cm_3_scaffold_3004_8
Pseudomonas sp. UW4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5499..5924)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. UW4 RepID=K9NLD0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:AFY20010.1}; TaxID=1207075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. U
hypothetical protein
13_1_20cm_3_scaffold_3004_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5963..6376)
DNA (414bp) protein (138aa)
YCII-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD2_9BACT
YCII-related protein {ECO:0000313|EMBL:EEF57956.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosph
DGPFAETKE family protein
13_1_20cm_3_scaffold_3004_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6419..6832)
DNA (414bp) protein (138aa)
YCII-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD1_9BACT
YCII-related protein {ECO:0000313|EMBL:EEF57955.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosph
DGPFAETKE family protein
13_1_20cm_3_scaffold_3004_trna_1
unknown

Not on your lists

comp(7560..7631)
DNA (72bp)
transferRNA
13_1_20cm_3_scaffold_3004_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7775..8413
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3C8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19239.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative phospholipid N-methyltransferase
13_1_20cm_3_scaffold_3004_12
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8410..9822
DNA (1413bp) protein (471aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=867903 species="Bacteria; Firmi
fumarase (EC:4.2.1.2)
fumarate hydratase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458E4
13_1_20cm_3_scaffold_3004_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9861..10238
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003771C86
Glyoxalase-like domain protein {ECO:0000313|EMBL:KFC61657.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;
hypothetical protein
13_1_20cm_3_scaffold_3004_14
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10246..11430)
DNA (1185bp) protein (395aa)
GCN5-related N-acetyltransferase family protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YXL9_METPS
GCN5-related N-acetyltransferase family protein {ECO:0000313|EMBL:BAI61191.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source=
GCN5-related N-acetyltransferase family protein
13_1_20cm_3_scaffold_3004_15
unknown

Not on your lists

11681..12220
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_20cm_3_scaffold_3004_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(12813..13130)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7N6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17526.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_3_scaffold_3004_17
unknown

Not on your lists

comp(13264..13482)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_3_scaffold_3004_18
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

13770..14999
DNA (1230bp) protein (410aa)
TIGR00300 family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJC9_SINAD
bifunctional protein LOR/SDH Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
hypothetical protein
13_1_20cm_3_scaffold_3004_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15012..15821
DNA (810bp) protein (270aa)
N-dimethylarginine dimethylaminohydrolase n=2 Tax=Singulisphaera acidiphila RepID=L0DKV3_SINAD
N-dimethylarginine dimethylaminohydrolase {ECO:0000313|EMBL:AGA29488.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="
N-dimethylarginine dimethylaminohydrolase
13_1_20cm_3_scaffold_3004_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15879..17642)
DNA (1764bp) protein (588aa)
PHP domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2N1_9BACT
PHP domain protein {ECO:0000313|EMBL:EDY19471.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pol4; DNA polymerase IV fused to PHP phosphatase
13_1_20cm_3_scaffold_3004_21

Not on your lists

comp(17724..18998)
DNA (1275bp) protein (425aa)
Conserved repeat domain protein {ECO:0000313|EMBL:KKS82885.1}; TaxID=1619011 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_43_10.;"
Fibronectin type III domain protein (Fragment) id=4338952 bin=GWF2_Bacteroidetes_33_16 species=Moritella sp. PE36 genus=Moritella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Displaying 22 items

View Taxonomy