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13_1_20cm_3_scaffold_301

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_301_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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707..2125
DNA (1419bp) protein (473aa)
DNA polymerase III gamma and tau subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E4_GEMAT
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:AHG90418.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA polymerase III, subunits gamma and tau
13_1_20cm_3_scaffold_301_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2148..2465
DNA (318bp) protein (106aa)
Nucleoid-associated protein Hore_20780 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CZX1_HALOH
Nucleoid-associated protein J421_2882 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
UPF0133 protein ybaB
13_1_20cm_3_scaffold_301_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2467..3057
DNA (591bp) protein (197aa)
Recombination protein RecR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E6_GEMAT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Recombination protein recR
13_1_20cm_3_scaffold_301_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3054..3326
DNA (273bp) protein (91aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90421.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_3_scaffold_301_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3337..3828
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E7_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:BAH38157.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
hypothetical protein
13_1_20cm_3_scaffold_301_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3849..4520
DNA (672bp) protein (224aa)
Gliding motility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E8_GEMAT
gliding motility protein; K06883 Tax=RBG_16_Gemmatimonadetes_66_8_curated
gliding motility protein
13_1_20cm_3_scaffold_301_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4538..5209
DNA (672bp) protein (224aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:BAH38159.1}; EC=2.7.8.5 {ECO:0000313|EMBL:BAH38159.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimo
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E9_GEMAT
13_1_20cm_3_scaffold_301_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5215..6480
DNA (1266bp) protein (422aa)
CinA-like protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=CINAL_GEMAT
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Competence-damaged protein
13_1_20cm_3_scaffold_301_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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6490..7143
DNA (654bp) protein (218aa)
Protein GrpE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7F5_GEMAT
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimon
Protein grpE
13_1_20cm_3_scaffold_301_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7167..8297
DNA (1131bp) protein (377aa)
Chaperone protein DnaJ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7F6_GEMAT
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain
dnaJ; chaperone protein DnaJ
13_1_20cm_3_scaffold_301_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8336..9070)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH97_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60732.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
hypothetical protein
13_1_20cm_3_scaffold_301_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(9064..10638)
DNA (1575bp) protein (525aa)
Beta-N-acetylhexosaminidase n=1 Tax=Streptomyces gancidicus BKS 13-15 RepID=M3CYA0_9ACTO
Glycoside hydrolase, family 20, catalytic core {ECO:0000313|EMBL:AHG89788.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Glycoside hydrolase, family 20, catalytic core
13_1_20cm_3_scaffold_301_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(10684..11787)
DNA (1104bp) protein (368aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacter
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G2_GEMAT
tRNA-specific 2-thiouridylase mnmA
13_1_20cm_3_scaffold_301_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(11790..12953)
DNA (1164bp) protein (388aa)
Aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G3_GEMAT
Aminotransferase class V {ECO:0000313|EMBL:AHG90429.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
aminotransferase class V
13_1_20cm_3_scaffold_301_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12968..13753)
DNA (786bp) protein (262aa)
tryptophan 2 3-dioxygenase n=1 Tax=Amycolatopsis methanolica RepID=UPI00036E017E
Tryptophan 23-dioxygenase {ECO:0000313|EMBL:AHG90432.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
tryptophan 23-dioxygenase
13_1_20cm_3_scaffold_301_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13976..14404)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G7_GEMAT
Bacillithiol biosynthesis deacetylase, BshB1 {ECO:0000313|EMBL:AHG90433.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Bacillithiol biosynthesis deacetylase, BshB1
13_1_20cm_3_scaffold_301_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14414..15658)
DNA (1245bp) protein (415aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADD8_GEMAT
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:AHG88951.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
MacB-like periplasmic core domain protein
13_1_20cm_3_scaffold_301_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15655..16896)
DNA (1242bp) protein (414aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIC3_KORVE id=5224104 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:AHG88952.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
MacB-like periplasmic core domain protein
Displaying 18 items

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