ggKbase home page

13_1_20cm_3_scaffold_346

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_346_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3..581)
DNA (579bp) protein (193aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
2-oxoglutarate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVM2_9BACT
13_1_20cm_3_scaffold_346_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

943..2340
DNA (1398bp) protein (466aa)
aspartate ammonia-lyase; K01679 fumarate hydratase, class II [EC:4.2.1.2] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
aspartate ammonia-lyase (EC:4.2.1.2)
Fumarase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IL41_ANADE
13_1_20cm_3_scaffold_346_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2360..3922
DNA (1563bp) protein (521aa)
Na+/H+ antiporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMX7_9BACT
Na+/H+ antiporter {ECO:0000313|EMBL:EEF58773.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;"
putative Na+/H+ antiporter
13_1_20cm_3_scaffold_346_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3922..5271
DNA (1350bp) protein (450aa)
Peptidase M20 family protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A3W7_9ACTN
peptidase M20 family protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
peptidase M20 family protein
13_1_20cm_3_scaffold_346_5
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(5362..6564)
DNA (1203bp) protein (401aa)
diguanylate cyclase n=1 Tax=Deinococcus apachensis RepID=UPI000367E1CD
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:AFZ69439.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="D
Zn-dependent dipeptidase, microsomal dipeptidase
13_1_20cm_3_scaffold_346_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6640..7434
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K4F2_SACES
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDP52045.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
hypothetical protein
13_1_20cm_3_scaffold_346_7
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7415..8488)
DNA (1074bp) protein (358aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Sa
2-dehydropantoate 2-reductase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2C6_SACES
hypothetical protein
13_1_20cm_3_scaffold_346_8
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

8527..9723
DNA (1197bp) protein (399aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Paenibacillus sp. Aloe-11 RepID=H6CPY6_9BACL
spermidine/putrescine-binding periplasmic protein; K02055 putative spermidine/putrescine transport system substrate-binding protein Tax=RBG_16_Acidobacteria_64_8_curated
spermidine/putrescine ABC transporter substrate-binding protein
13_1_20cm_3_scaffold_346_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

9720..10811
DNA (1092bp) protein (364aa)
spermidine/putrescine ABC transporter ATPase; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] Tax=RBG_16_Armatimonadetes_67_12_curated
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G354_CHLAD rbh
spermidine/putrescine ABC transporter ATPase
13_1_20cm_3_scaffold_346_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10817..12514
DNA (1698bp) protein (566aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IA75_METNO rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACL59138.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
binding-protein-dependent transport system inner membrane protein
13_1_20cm_3_scaffold_346_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(12872..13444)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI000368111F
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_20cm_3_scaffold_346_12
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Berkelbacteria, Bacteria

Not on your lists

comp(13572..14120)
DNA (549bp) protein (183aa)
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Tax=RIFCSPLOWO2_01_FULL_Berkelbacteria_50_28_curated
peptidyl-prolyl cis-trans isomerase id=14627207 bin=bin7_NC10_sister species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
13_1_20cm_3_scaffold_346_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


14184..15533
DNA (1350bp) protein (450aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=14629925 bin=bin8_Chloro species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
histidyl-tRNA synthetase (EC:6.1.1.21)
hisS; histidyl-tRNA synthetase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_3_scaffold_346_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15530..16807)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VNA8_PSEU5
Uncharacterized protein {ECO:0000313|EMBL:ABP80459.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutze
hypothetical protein
13_1_20cm_3_scaffold_346_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

17355..18452
DNA (1098bp) protein (366aa)
cysteine desulfurase NifS (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AA22_CARHZ
13_1_20cm_3_scaffold_346_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

18490..19542
DNA (1053bp) protein (351aa)
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG93_THET1
13_1_20cm_3_scaffold_346_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

19547..20908
DNA (1362bp) protein (454aa)
Integral membrane protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJK8_9CHLR
transporter Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_3_scaffold_346_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

20924..21166
DNA (243bp) protein (81aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_3_scaffold_346_19
BJP_IG2069_Anaerolineales_43_63, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

21200..21478
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI0002DB67DF
Tax=BJP_IG2069_Anaerolineales_43_63
13_1_20cm_3_scaffold_346_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


21675..24188
DNA (2514bp) protein (838aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZ15_THERP
13_1_20cm_3_scaffold_346_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

24181..25239
DNA (1059bp) protein (353aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_20cm_3_scaffold_346_22
unknown

Not on your lists

25664..26647
DNA (984bp) protein (328aa)

This feature has no annotations

13_1_20cm_3_scaffold_346_23
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

26651..27031
DNA (381bp) protein (127aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=765420 specie
Putative Holliday junction resolvase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IER5_9CHLR
Holliday junction resolvase YqgF
13_1_20cm_3_scaffold_346_24
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

27031..28170
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MY27_ANATU
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ64258.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophi
hypothetical protein
13_1_20cm_3_scaffold_346_25
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28167..28979
DNA (813bp) protein (271aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
shikimate dehydrogenase n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B55F2A
AroE; shikimate 5-dehydrogenase
13_1_20cm_3_scaffold_346_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28976..30121
DNA (1146bp) protein (382aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDM5_THET1
13_1_20cm_3_scaffold_346_27
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

30121..31716
DNA (1596bp) protein (532aa)
3-dehydroquinate synthase; K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4] Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
aroB-aroK; bifunctional 3-dehydroquinate synthase/shikimate kinase (EC:2.7.1.71 4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=24447243 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
3-dehydroquinate synthase
13_1_20cm_3_scaffold_346_28
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31713..31871
DNA (159bp) protein (53aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002FB46E1
Displaying 28 items

View Taxonomy