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13_1_20cm_3_scaffold_3742

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_3742_trna_1
unknown

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comp(54..127)
DNA (74bp)
transferRNA
13_1_20cm_3_scaffold_3742_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1030..1509
DNA (480bp) protein (160aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=204669 species=
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMW9_KORVE
N-acetylglucosamine 6-phosphate deacetylase
13_1_20cm_3_scaffold_3742_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1527..2657
DNA (1131bp) protein (377aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT00_KORVE
glutamine--fructose-6-phosphate transaminase
13_1_20cm_3_scaffold_3742_3
unknown

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comp(2662..3042)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_20cm_3_scaffold_3742_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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3527..4645
DNA (1119bp) protein (373aa)
Aminotransferase {ECO:0000313|EMBL:ABJ83020.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABJ83020.1};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacterace
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026P9_SOLUE rbh
13_1_20cm_3_scaffold_3742_5
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4755..5015
DNA (261bp) protein (87aa)
SpoVT/AbrB domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AEH9_9PROT
SpoVT/AbrB domain-containing protein {ECO:0000313|EMBL:EME70959.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" sourc
SpoVT/AbrB-like protein
13_1_20cm_3_scaffold_3742_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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5015..5413
DNA (399bp) protein (133aa)
Ribonuclease VapC n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YX83_9PROT
PilT protein-like; K07062 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
ntrR2; NtrR2 transcription regulator
13_1_20cm_3_scaffold_3742_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5505..7193)
DNA (1689bp) protein (563aa)
RNA polymerase sigma factor SigA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIK4_KORVE rbh
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter vers
sigma 38, RpoS
13_1_20cm_3_scaffold_3742_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7615..9234
DNA (1620bp) protein (540aa)
TPR repeat protein n=1 Tax=Koribacter versatilis (strain Ellin345) PF7_KORVE">RepID=Q1IPF7_KORVE rbh
TPR repeat protein {ECO:0000313|EMBL:ABF41243.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter ver
hypothetical protein
13_1_20cm_3_scaffold_3742_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9253..10083)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHC8_KORVE
Uncharacterized protein {ECO:0000313|EMBL:ABF43722.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
hypothetical protein
13_1_20cm_3_scaffold_3742_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10083..10628)
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHC9_KORVE
Uncharacterized protein {ECO:0000313|EMBL:ABF43721.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
S-isoprenylcysteine methyltransferase-like protein
13_1_20cm_3_scaffold_3742_11
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(10621..11703)
DNA (1083bp) protein (361aa)
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:ACO32682.1}; EC=2.-.-.- {ECO:0000313|EMBL:ACO32682.1};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; A
rfaC; lipopolysaccharide heptosyltransferase I (EC:2.-.-.-)
Lipopolysaccharide heptosyltransferase I n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F752_ACIC5
13_1_20cm_3_scaffold_3742_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11700..12107)
DNA (408bp) protein (136aa)
D-beta-D-heptose 1-phosphate adenosyltransferase (EC:2.7.7.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Cytidyltransferase-related domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEC4_CHLTF
cytidyltransferase-related domain-containing protein
13_1_20cm_3_scaffold_3742_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12211..13284)
DNA (1074bp) protein (358aa)
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase (EC:2.7.7.-)
hldE; D-beta-D-heptose 7-phosphate kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ADP-heptose synthase/ D-glycero-beta-D-manno-heptose 7-phosphate kinase id=4941208 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_3_scaffold_3742_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13314..14252)
DNA (939bp) protein (313aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; EC=2.7.1.130 {ECO:0000255|HAMAP-Rule:MF_00409};; Lipid A 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; TaxID=204669 species="Bacteria;
Tetraacyldisaccharide 4'-kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=LPXK_KORVE
lipid-A-disaccharide synthase
13_1_20cm_3_scaffold_3742_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14281..15522)
DNA (1242bp) protein (414aa)
Three-deoxy-D-manno-octulosonic-acid transferase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHD3_KORVE
Three-deoxy-D-manno-octulosonic-acid transferase-like protein {ECO:0000313|EMBL:ABF43717.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;
3-deoxy-D-manno-octulosonic-acid transferase
13_1_20cm_3_scaffold_3742_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15609..16121)
DNA (513bp) protein (171aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIL3_KORVE
peptide deformylase
13_1_20cm_3_scaffold_3742_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16145..16891)
DNA (747bp) protein (249aa)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:
Chorismate synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=AROC_KORVE
chorismate synthase
Displaying 18 items

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