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13_1_20cm_3_scaffold_6135

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_6135_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


2..169
DNA (168bp) protein (56aa)
LSU ribosomal protein L31P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L31 id=14625930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpmE; ribosomal protein L31
13_1_20cm_3_scaffold_6135_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

239..1315
DNA (1077bp) protein (359aa)
prfA; peptide chain release factor 1 Tax=GWA2_Rokubacteria_73_35_curated
Peptide chain release factor 1 id=4980433 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
prfA; peptide chain release factor 1
13_1_20cm_3_scaffold_6135_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1315..2190
DNA (876bp) protein (292aa)
protein-(glutamine-N5) methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Modification methylase HemK (EC:2.1.1.72)
Release factor glutamine methyltransferase id=4980434 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_3_scaffold_6135_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2190..3443
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=4980435 bin=GWA2_Methylomirabilis_73_35 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_20cm_3_scaffold_6135_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3440..4117
DNA (678bp) protein (226aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) id=14625934 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
13_1_20cm_3_scaffold_6135_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4114..5337
DNA (1224bp) protein (408aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidinol dehydrogenase id=4831882 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
histidinol dehydrogenase
13_1_20cm_3_scaffold_6135_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5334..5939
DNA (606bp) protein (202aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=14625936 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
13_1_20cm_3_scaffold_6135_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6191..6475
DNA (285bp) protein (95aa)
imidazole glycerol phosphate synthase subunit hisH; K02501 glutamine amidotransferase [EC:2.4.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-] id=14625937 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
13_1_20cm_3_scaffold_6135_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6472..7197
DNA (726bp) protein (242aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase id=14625938 bin=bin7_NC10_sister species=Acinetobacter nectaris genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
13_1_20cm_3_scaffold_6135_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7197..7964
DNA (768bp) protein (256aa)
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Imidazole glycerol phosphate synthase subunit HisF id=4246275 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
imidazoleglycerol phosphate synthase, cyclase subunit
13_1_20cm_3_scaffold_6135_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7961..8611
DNA (651bp) protein (217aa)
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19] Tax=RIFCSPLOWO2_02_FULL_
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein hisIE id=4831887 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_3_scaffold_6135_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8619..9131
DNA (513bp) protein (171aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4246273 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_3_scaffold_6135_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9139..9900
DNA (762bp) protein (254aa)
yrbE; toluene ABC transporter subunit membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
yrbE; toluene ABC transporter subunit membrane protein id=14625942 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
yrbE; toluene ABC transporter subunit membrane protein
13_1_20cm_3_scaffold_6135_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9909..10523
DNA (615bp) protein (205aa)
ABC transporter ATPase; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter; K02065 putative ABC transport system ATP-binding protein id=14625943 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_1_20cm_3_scaffold_6135_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10590..11783
DNA (1194bp) protein (398aa)
Mce family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Mce family protein id=4675086 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Mce family protein
13_1_20cm_3_scaffold_6135_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11764..13131
DNA (1368bp) protein (456aa)
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=GWA2_Rokubacteria_73_35_curated
DNA repair protein radA id=3836394 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
radA; DNA repair protein RadA
13_1_20cm_3_scaffold_6135_17
GWC2_Methylomirabilis_70_16, GWC2_Methylomirabilis_70_16, GWC2_Methylomirabilis_70_16, GWC2_Methylomirabilis_70_16, Methylomirabilis, Bacteria

Not on your lists

13153..13509
DNA (357bp) protein (119aa)
PilT protein domain protein id=3757267 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 17 items

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