ggKbase home page

13_1_20cm_3_scaffold_7249

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_7249_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(3..281)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDF3_CONWI
Uncharacterized protein {ECO:0000313|EMBL:ADB53545.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woe
hypothetical protein
13_1_20cm_3_scaffold_7249_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(278..706)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW5_9BACT
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
13_1_20cm_3_scaffold_7249_3
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(703..1014)
DNA (312bp) protein (104aa)
Transcriptional regulator, ArsR family n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IG70_ANADE
Transcriptional repressor SdpR {ECO:0000313|EMBL:GAO03115.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobac
ArsR family transcriptional regulator
13_1_20cm_3_scaffold_7249_4
Plasmodium knowlesi, Plasmodium, Haemosporida, Aconoidasida, Apicomplexa, Eukaryota

Not on your lists

comp(1097..1342)
DNA (246bp) protein (82aa)
Circumsporozoite protein n=1 Tax=Plasmodium knowlesi RepID=F2VIK4_PLAKN
Circumsporozoite protein {ECO:0000313|EMBL:ADN94514.1}; TaxID=5850 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium).;" source="
13_1_20cm_3_scaffold_7249_5
Arthrobacter sp. Rue61a, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1376..1585)
DNA (210bp) protein (70aa)
cold-shock protein n=1 Tax=Humibacter albus RepID=UPI0003B6FEC0
Cold shock protein ScoF {ECO:0000313|EMBL:AFR29062.1}; TaxID=1118963 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. Rue61a.;"
scoF; cold shock protein ScoF
13_1_20cm_3_scaffold_7249_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1688..2425)
DNA (738bp) protein (246aa)
UPI0003CE49C8 related cluster n=1 Tax=unknown RepID=UPI0003CE49C8
Uncharacterized protein {ECO:0000313|EMBL:ESW80438.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
13_1_20cm_3_scaffold_7249_7
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2508..2978)
DNA (471bp) protein (157aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
methionine sulfoxide reductase A (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037A72A8
13_1_20cm_3_scaffold_7249_8
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3034..4068)
DNA (1035bp) protein (345aa)
DNA polymerase LigD, polymerase domain n=2 Tax=Saccharomonospora azurea RepID=H8G605_9PSEU rbh
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK88653.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZ
DNA polymerase LigD, polymerase domain-containing protein rbh
13_1_20cm_3_scaffold_7249_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

4418..4684
DNA (267bp) protein (89aa)
protein-disulfide isomerase n=1 Tax=Patulibacter americanus RepID=UPI0003B37093
thioredoxin domain-containing protein Tax=RBG_16_Actinobacteria_68_12_curated
putative dithiol-disulfide isomerase
13_1_20cm_3_scaffold_7249_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4902..6200)
DNA (1299bp) protein (433aa)
RtcB protein n=1 Tax=Patulibacter americanus RepID=UPI0003B4C52C
RtcB protein {ECO:0000313|EMBL:AIE87263.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoi
RtcB protein
13_1_20cm_3_scaffold_7249_trna_6
unknown

Not on your lists

comp(6256..6326)
DNA (71bp)
transferRNA
13_1_20cm_3_scaffold_7249_trna_5
unknown

Not on your lists

comp(6344..6428)
DNA (85bp)
transferRNA
13_1_20cm_3_scaffold_7249_trna_4
unknown

Not on your lists

comp(6489..6563)
DNA (75bp)
transferRNA
13_1_20cm_3_scaffold_7249_11
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6573..7349
DNA (777bp) protein (259aa)
Ankyrin n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WYG5_ALIAD
Ankyrin {ECO:0000313|EMBL:ACV60059.1}; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocal
ankyrin
13_1_20cm_3_scaffold_7249_trna_3
unknown

Not on your lists

comp(7521..7593)
DNA (73bp)
transferRNA
13_1_20cm_3_scaffold_7249_trna_2
unknown

Not on your lists

comp(7588..7656)
DNA (69bp)
transferRNA
13_1_20cm_3_scaffold_7249_trna_1
unknown

Not on your lists

comp(7708..7780)
DNA (73bp)
transferRNA
13_1_20cm_3_scaffold_7249_12
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

8518..9240
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LRA6_9MICO
esterase Tax=RBG_16_RIF_CHLX_72_14_curated
esterase
13_1_20cm_3_scaffold_7249_13
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

9237..9428
DNA (192bp) protein (64aa)
hypothetical protein Tax=RBG_16_RIF_CHLX_72_14_curated
hypothetical protein; K09927 hypothetical protein id=14629200 bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
Displaying 19 items

View Taxonomy