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13_1_20cm_4_scaffold_1132

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1132_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3..209)
DNA (207bp) protein (69aa)
von Willebrand factor type A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUT5_9BACT
von Willebrand factor type A {ECO:0000313|EMBL:EDY22323.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_1132_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(451..3492)
DNA (3042bp) protein (1014aa)
Multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE68_GEMAT rbh
Multidrug resistance protein {ECO:0000313|EMBL:BAH40795.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (stra
multidrug resistance protein
13_1_20cm_4_scaffold_1132_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3489..4514)
DNA (1026bp) protein (342aa)
Secretion protein HlyD family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE69_GEMAT
Secretion protein HlyD family protein {ECO:0000313|EMBL:BAH40796.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auranti
secretion protein HlyD family protein
13_1_20cm_4_scaffold_1132_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4706..6088)
DNA (1383bp) protein (461aa)
Outer membrane efflux protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE70_GEMAT rbh
Outer membrane efflux protein {ECO:0000313|EMBL:BAH40797.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
outer membrane efflux protein
13_1_20cm_4_scaffold_1132_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(6151..6792)
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJC6_KORVE
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABF43024.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter ve
TetR family transcriptional regulator
13_1_20cm_4_scaffold_1132_6
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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6854..7783
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6I0K5_9GAMM
alpha/beta hydrolase fold protein Tax=RBG_16_Gammaproteobacteria_51_14_curated
predicted hydrolase or acyltransferase alpha/beta hydrolase superfamily
13_1_20cm_4_scaffold_1132_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(7829..8692)
DNA (864bp) protein (288aa)
ctaG; putative CtaG protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
Putative CtaG protein id=4393244 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1132_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(8689..9018)
DNA (330bp) protein (110aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_20cm_4_scaffold_1132_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9163..9549)
DNA (387bp) protein (129aa)
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase subunit III id=4393248 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1132_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9553..11361)
DNA (1809bp) protein (603aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_20cm_4_scaffold_1132_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11358..12185)
DNA (828bp) protein (276aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1)
13_1_20cm_4_scaffold_1132_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12242..12685)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW94662.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_20cm_4_scaffold_1132_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12820..13269)
DNA (450bp) protein (150aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90186.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_1132_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13266..14717)
DNA (1452bp) protein (484aa)
SusD-like protein {ECO:0000313|EMBL:AHG90185.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SusD-like protein
Putative uncharacterized protein id=2752104 bin=GWF2_Melioribacter_38_21 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
13_1_20cm_4_scaffold_1132_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14736..18098)
DNA (3363bp) protein (1121aa)
TonB-dependent receptor {ECO:0000313|EMBL:AHG90184.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
TonB-dependent receptor
TonB-dependent receptor plug id=2752110 bin=GWF2_Melioribacter_38_21 species=Muricauda ruestringensis genus=Muricauda taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
13_1_20cm_4_scaffold_1132_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(18448..19245)
DNA (798bp) protein (266aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FWF0_STIAD
DNA-binding response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
LyTR family two component transcriptional regulator
13_1_20cm_4_scaffold_1132_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19242..20372)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y0M5_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AGP37725.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
hypothetical protein
13_1_20cm_4_scaffold_1132_18
S_OP1_64_32, KB1, Bacteria

Not on your lists

20844..22373
DNA (1530bp) protein (510aa)
prephenate dehydratase (EC:4.2.1.51)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003697C56
Prephenate dehydratase Tax=S_OP1_64_32
13_1_20cm_4_scaffold_1132_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22382..23884
DNA (1503bp) protein (501aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFJ4_9CYAN
13_1_20cm_4_scaffold_1132_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23955..25079)
DNA (1125bp) protein (375aa)
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBS5_9BACT
13_1_20cm_4_scaffold_1132_21
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25076..25696)
DNA (621bp) protein (207aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
isopropylmalate isomerase n=1 Tax=Alicyclobacillus pohliae RepID=UPI00035F8E74
leuD; 3-isopropylmalate dehydratase small subunit
13_1_20cm_4_scaffold_1132_22
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25693..26940)
DNA (1248bp) protein (416aa)
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:00
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=LEUC_SYMTH
Displaying 22 items

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