ggKbase home page

13_1_20cm_4_scaffold_1331

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1331_1
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3..665)
DNA (663bp) protein (221aa)
Antibiotic hydrolase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCH0_9PLAN
Antibiotic hydrolase {ECO:0000313|EMBL:EDL57615.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hydrolase, CocE/NonD family
13_1_20cm_4_scaffold_1331_2
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(637..1968)
DNA (1332bp) protein (444aa)
4-aminobutyrate aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=GWA2_Elusimicrobia_69_24_curated
Acetylornithine aminotransferase id=4970915 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia rbh
4-aminobutyrate aminotransferase
13_1_20cm_4_scaffold_1331_3
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

comp(1965..3551)
DNA (1587bp) protein (529aa)
aldH; aldehyde dehydrogenase (EC:1.2.1.-); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
aldH; aldehyde dehydrogenase (EC:1.2.1.-)
1-pyrroline-5-carboxylate dehydrogenase 1 id=4917885 bin=GWA2_Elusimicrobia_66_18 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
13_1_20cm_4_scaffold_1331_4
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3556..4914)
DNA (1359bp) protein (453aa)
class III aminotransferase; K00837 [EC:2.6.1.-] Tax=GWA2_Elusimicrobia_69_24_curated
Aminotransferase, class III id=4970914 bin=GWA2_Elusimicrobia_69_24 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
class III aminotransferase
13_1_20cm_4_scaffold_1331_5
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5006..7048
DNA (2043bp) protein (681aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GIA3_9CYAN
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EKQ67231.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanob
tolB; peptidase S9 prolyl oligopeptidase active site domain protein
13_1_20cm_4_scaffold_1331_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7045..7506
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A859_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_1331_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

7503..8513
DNA (1011bp) protein (337aa)
putative oxidoreductase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RBG_16_Acidobacteria_70_10_curated
2-nitropropane dioxygenase id=3531975 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
putative oxidoreductase
13_1_20cm_4_scaffold_1331_8
unknown

Not on your lists

comp(8482..8874)
DNA (393bp) protein (131aa)
protein of unknown function DUF4397
13_1_20cm_4_scaffold_1331_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9040..9813)
DNA (774bp) protein (258aa)
hypothetical protein; K00540 [EC:1.-.-.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein; K00540 [EC:1.-.-.-] id=24472762 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_20cm_4_scaffold_1331_10
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9875..10102)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D42_POLSJ
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein
13_1_20cm_4_scaffold_1331_11
Tatlockia micdadei, Tatlockia, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10051..10803)
DNA (753bp) protein (251aa)
YVTN beta-propeller repeat-containing protein n=1 Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AXS9_FRADG
Uncharacterized protein {ECO:0000313|EMBL:CEG59969.1}; TaxID=451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Tatlockia.;" source="Tatlockia micdadei (Legione
conserved protein of unknown function
13_1_20cm_4_scaffold_1331_12
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10907..11866)
DNA (960bp) protein (320aa)
Quinone oxidoreductase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1B8_9RHOB
Quinone oxidoreductase {ECO:0000313|EMBL:EAQ02101.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis
NAD(P)H quinone oxidoreductase
13_1_20cm_4_scaffold_1331_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

11943..13658
DNA (1716bp) protein (572aa)
putative hydrolase; K06978 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Hydrolase CocE/NonD family protein id=4927116 bin=GWA2_Ignavibacteria_55_11 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hydrolase CocE/NonD family protein
13_1_20cm_4_scaffold_1331_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13655..14239
DNA (585bp) protein (195aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=CSP1_5_NC10
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] id=14431486 bin=bin3_NC10 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
tag; DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
13_1_20cm_4_scaffold_1331_15
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14220..14759)
DNA (540bp) protein (180aa)
Amidase {ECO:0000313|EMBL:KFA93449.1}; EC=3.5.1.4 {ECO:0000313|EMBL:KFA93449.1};; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00035EE4FB
Amidase
13_1_20cm_4_scaffold_1331_16
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14729..15742)
DNA (1014bp) protein (338aa)
Amidotransferase-related protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PGG0_9DELT
Amidotransferase-related protein {ECO:0000313|EMBL:EPX63455.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" s
gatA2; amidase
13_1_20cm_4_scaffold_1331_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

15817..16704
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=16960850 bin=RBG_16_Aminicenantes_66_30 species=Eudoraea adriatica genus=Eudoraea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_20cm_4_scaffold_1331_18
unknown

Not on your lists

16766..16969
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_4_scaffold_1331_19
Rhodococcus sp. NS1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16977..18269)
DNA (1293bp) protein (431aa)
TPR repeat protein n=1 Tax=Rhodococcus sp. NS1 RepID=Q06G97_9NOCA
TPR repeat protein {ECO:0000313|EMBL:ABI79414.1}; TaxID=402236 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. NS1.;"
Predicted ATPase
13_1_20cm_4_scaffold_1331_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18266..19684)
DNA (1419bp) protein (473aa)
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=2304889 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
13_1_20cm_4_scaffold_1331_21
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19681..20322)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003683974
protein serine/threonine phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
protein serine/threonine phosphatase
13_1_20cm_4_scaffold_1331_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20315..20725)
DNA (411bp) protein (137aa)
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
Putative anti-sigma regulatory factor, serine/threonine protein kinase id=4927123 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
anti-sigma regulatory factor, serine/threonine protein kinase
13_1_20cm_4_scaffold_1331_23
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(20718..21095)
DNA (378bp) protein (126aa)
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
rsbS; sigma activity regulator
Displaying 23 items

View Taxonomy