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13_1_20cm_4_scaffold_1521

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1521_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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210..1427
DNA (1218bp) protein (406aa)
Type IV pilus biogenesis protein PilC n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD5_9BACT rbh
Type IV pilus biogenesis protein PilC {ECO:0000313|EMBL:CBK40544.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
pilC; type IV pilus biogenesis protein PilC
13_1_20cm_4_scaffold_1521_2
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1598..1882
DNA (285bp) protein (95aa)
putative sensor protein PilS (EC:2.7.13.3); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative sensor protein PilS (EC:2.7.13.3)
Putative Sensor protein PilS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD6_9BACT
13_1_20cm_4_scaffold_1521_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1960..3225
DNA (1266bp) protein (422aa)
putative sensor protein PilS (EC:2.7.13.3); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative sensor protein PilS (EC:2.7.13.3)
Putative Sensor protein PilS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD6_9BACT rbh
13_1_20cm_4_scaffold_1521_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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3210..3602
DNA (393bp) protein (131aa)
Transcriptional regulatory protein pilR n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD7_9BACT
Transcriptional regulatory protein pilR {ECO:0000313|EMBL:CBK40546.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.
pilR; transcriptional regulatory protein pilR
13_1_20cm_4_scaffold_1521_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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3635..4483
DNA (849bp) protein (283aa)
Transcriptional regulatory protein pilR n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD7_9BACT
Transcriptional regulatory protein pilR {ECO:0000313|EMBL:CBK40546.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.
pilR; transcriptional regulatory protein pilR
13_1_20cm_4_scaffold_1521_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

4458..5399
DNA (942bp) protein (314aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD8_9BACT rbh
13_1_20cm_4_scaffold_1521_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5590..6537
DNA (948bp) protein (316aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CBK40548.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:00003
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD9_9BACT rbh
13_1_20cm_4_scaffold_1521_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


6588..6917
DNA (330bp) protein (110aa)
50S ribosomal protein L25 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE0_9BACT
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=330214 sp
rplY; 50S ribosomal protein L25
13_1_20cm_4_scaffold_1521_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


6863..7240
DNA (378bp) protein (126aa)
50S ribosomal protein L25 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE0_9BACT
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rplY; 50S ribosomal protein L25
13_1_20cm_4_scaffold_1521_10
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

7243..7827
DNA (585bp) protein (195aa)
pth; aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
pth; aminoacyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE1_9BACT
13_1_20cm_4_scaffold_1521_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7909..9000
DNA (1092bp) protein (364aa)
Ribosome-binding ATPase YchF n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AFY9_GEOSK
ychF; GTP-binding protein YchF; K06942 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
GTP-binding protein
13_1_20cm_4_scaffold_1521_12
unknown

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9215..9718
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_20cm_4_scaffold_1521_13
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


10131..10478
DNA (348bp) protein (116aa)
30S ribosomal protein S6 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE7_9BACT
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpsF; 30S ribosomal protein S6
13_1_20cm_4_scaffold_1521_14
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

10465..10866
DNA (402bp) protein (134aa)
Single-stranded DNA-binding protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE8_9BACT
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
ssb; single-stranded DNA-binding protein
13_1_20cm_4_scaffold_1521_15
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


11232..11483
DNA (252bp) protein (84aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
30S ribosomal protein S18 id=3688636 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
30S ribosomal protein S18
13_1_20cm_4_scaffold_1521_16
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

11499..12113
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF0_9BACT
hypothetical protein; K07040 uncharacterized protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_1_20cm_4_scaffold_1521_17
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


12152..12337
DNA (186bp) protein (62aa)
rpmF; ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
50S ribosomal protein L32 id=3567763 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
rpmF; 50S ribosomal protein L32
13_1_20cm_4_scaffold_1521_18
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

12647..13672
DNA (1026bp) protein (342aa)
plsX; fatty acid/phospholipid synthesis protein; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Phosphate acyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF2_9BACT rbh
plsX; fatty acid/phospholipid synthesis protein
13_1_20cm_4_scaffold_1521_19
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

13669..14643
DNA (975bp) protein (325aa)
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF3_9BACT rbh
13_1_20cm_4_scaffold_1521_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14926..15201
DNA (276bp) protein (92aa)
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF4_9BACT
Displaying 20 items

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