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13_1_20cm_4_scaffold_1768

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1768_1
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

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140..697
DNA (558bp) protein (186aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF id=5224911 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
molybdopterin and thiamine biosynthesis family dinucleotide-utilizing protein; K11996 adenylyltransferase and sulfurtransferase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
rhodanese/MoeB/ThiF domain-containing protein
13_1_20cm_4_scaffold_1768_trna_1
unknown

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comp(699..782)
DNA (84bp)
transferRNA
13_1_20cm_4_scaffold_1768_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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932..1309
DNA (378bp) protein (126aa)
single-stranded DNA-binding protein n=1 Tax=actinobacterium SCGC AAA027-J17 RepID=UPI00036CBCFE
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SsrA-binding protein
13_1_20cm_4_scaffold_1768_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1306..1761
DNA (456bp) protein (152aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1768_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1794..2402
DNA (609bp) protein (203aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J7_GEMAT
13_1_20cm_4_scaffold_1768_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2399..3886
DNA (1488bp) protein (496aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_4_scaffold_1768_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3883..4593
DNA (711bp) protein (237aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydroorotate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J6_GEMAT
Dihydroorotate dehydrogenase
13_1_20cm_4_scaffold_1768_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4597..5277
DNA (681bp) protein (227aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23) Tax=RBG_16_Gemmatimonadetes_66_8_curated
Orotidine 5'-phosphate decarboxylase n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YVE4_9SYNE
orotidine 5'-phosphate decarboxylase
13_1_20cm_4_scaffold_1768_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5293..5718
DNA (426bp) protein (142aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_1768_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5921..6304
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=2 Tax=Thermaerobacter RepID=E6SKX5_THEM7
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein S13
13_1_20cm_4_scaffold_1768_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6311..6766
DNA (456bp) protein (152aa)
30S ribosomal protein S11 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J2_GEMAT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsK; 30S ribosomal protein S11
13_1_20cm_4_scaffold_1768_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


6770..7405
DNA (636bp) protein (212aa)
30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J1_GEMAT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S4
13_1_20cm_4_scaffold_1768_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7402..8463
DNA (1062bp) protein (354aa)
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J0_GEMAT
DNA-directed RNA polymerase subunit alpha
13_1_20cm_4_scaffold_1768_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


8463..8819
DNA (357bp) protein (119aa)
50S ribosomal protein L17 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL17_GEMAT
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L17
13_1_20cm_4_scaffold_1768_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(8875..9066)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=RL28_GEODF
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpmB; 50S ribosomal protein L28
13_1_20cm_4_scaffold_1768_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

9084..10118
DNA (1035bp) protein (345aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Gemmatimonadetes_66_8_curated
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I7_GEMAT
13_1_20cm_4_scaffold_1768_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10115..11068
DNA (954bp) protein (318aa)
Putative GDP-6-deoxy-D-lyxo-4-hexulose reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I6_GEMAT
putative GDP-6-deoxy-D-lyxo-4-hexulose reductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_1768_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

11052..12431
DNA (1380bp) protein (460aa)
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Carbamoyl-phosphate synthase large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=CARB_GEMAT
Carbamoyl-phosphate synthase large subunit glutamine-dependent
Displaying 18 items

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