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13_1_20cm_4_scaffold_1793

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1793_1
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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1..513
DNA (513bp) protein (171aa)
Peptidase MA superfamily n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGD0_9FIRM
13_1_20cm_4_scaffold_1793_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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569..1201
DNA (633bp) protein (211aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1746145 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1793_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1198..1497
DNA (300bp) protein (100aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1793_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1499..1783
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1793_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1780..2709
DNA (930bp) protein (310aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_1_20cm_4_scaffold_1793_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2706..3527
DNA (822bp) protein (274aa)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
class I fumarate hydratase
13_1_20cm_4_scaffold_1793_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3448..4017)
DNA (570bp) protein (190aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase family 2 id=1746137 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
13_1_20cm_4_scaffold_1793_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4091..4288
DNA (198bp) protein (66aa)
Putative thioredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1793_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4304..4612
DNA (309bp) protein (103aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase-like thioredoxin
13_1_20cm_4_scaffold_1793_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4635..5573
DNA (939bp) protein (313aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=GWA2_Rokubacteria_70_23_curated
Sulfoxide reductase catalytic subunit YedY id=4762289 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_20cm_4_scaffold_1793_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5578..7542
DNA (1965bp) protein (655aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_20cm_4_scaffold_1793_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7539..8849
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64) id=14627604 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
processing peptidase (EC:3.4.24.64)
13_1_20cm_4_scaffold_1793_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8930..9742
DNA (813bp) protein (271aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA pseudouridine synthase
13_1_20cm_4_scaffold_1793_14
CSP1_5_NC10, NC10, Bacteria

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9915..10127
DNA (213bp) protein (71aa)
putative outer membrane protein Tax=CSP1_5_NC10
putative outer membrane protein id=14430016 bin=bin3_NC10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
outer membrane protein
13_1_20cm_4_scaffold_1793_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10167..10409)
DNA (243bp) protein (81aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_1793_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10589..11539
DNA (951bp) protein (317aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative VacJ-like lipoprotein
13_1_20cm_4_scaffold_1793_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11561..12490
DNA (930bp) protein (310aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1793_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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12526..13188
DNA (663bp) protein (221aa)
TetR family transcriptional regulator Tax=GWA2_Rokubacteria_70_23_curated
Transcriptional regulator, TetR family id=4677006 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia thailandensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
regulatory protein TetR
13_1_20cm_4_scaffold_1793_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13268..14191
DNA (924bp) protein (308aa)
FecR protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FecR protein id=4761859 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_20cm_4_scaffold_1793_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14188..16197)
DNA (2010bp) protein (670aa)
adenylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LS04_SYNAS
Displaying 20 items

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