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13_1_20cm_4_scaffold_1840

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1840_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1..2148
DNA (2148bp) protein (716aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A491_GEMAT
Phenylalanyl-tRNA synthetase beta chain
13_1_20cm_4_scaffold_1840_2
unknown

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2117..2509
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_20cm_4_scaffold_1840_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2506..2817
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A489_GEMAT
hypothetical protein; K09888 cell division protein ZapA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF710
13_1_20cm_4_scaffold_1840_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3371..4261
DNA (891bp) protein (297aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" s
Ribonuclease Y n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A488_GEMAT
2',3'-cyclic-nucleotide 2'-phosphodiesterase
13_1_20cm_4_scaffold_1840_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4293..5138
DNA (846bp) protein (282aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:3.5.4.9 1.5.1.5) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
folD; methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CDF9E
13_1_20cm_4_scaffold_1840_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5123..6280
DNA (1158bp) protein (386aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Exodeoxyribonuclease 7 large subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A486_GEMAT
Exodeoxyribonuclease 7 large subunit
13_1_20cm_4_scaffold_1840_7
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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6280..6519
DNA (240bp) protein (80aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RBG_13_Actinobacteria_55_18_curated
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A485_GEMAT
13_1_20cm_4_scaffold_1840_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6560..7435
DNA (876bp) protein (292aa)
geranyltranstransferase (EC:2.5.1.10); K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Geranyltranstransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A484_GEMAT
Polyprenyl synthetase
13_1_20cm_4_scaffold_1840_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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7630..9330
DNA (1701bp) protein (567aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A483_GEMAT
1-deoxy-D-xylulose-5-phosphate synthase
13_1_20cm_4_scaffold_1840_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9327..10199
DNA (873bp) protein (291aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PPNK_GEMAT
inorganic polyphosphate/ATP-NAD kinase
13_1_20cm_4_scaffold_1840_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10199..11917
DNA (1719bp) protein (573aa)
DNA repair protein RecN n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A481_GEMAT rbh
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA repair protein RecN
13_1_20cm_4_scaffold_1840_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(11844..13448)
DNA (1605bp) protein (535aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1840_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(13518..14735)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE88_RHOMR
Uncharacterized protein {ECO:0000313|EMBL:AEN72080.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
hypothetical protein
13_1_20cm_4_scaffold_1840_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(14971..16044)
DNA (1074bp) protein (358aa)
long-chain fatty acid transporter n=1 Tax=Salisaeta longa RepID=UPI0003B60388
Long-chain fatty acid transport protein [Precursor] {ECO:0000313|EMBL:CBH25087.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.
fadL; Long-chain fatty acid transport protein
13_1_20cm_4_scaffold_1840_15
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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16082..16852
DNA (771bp) protein (257aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:M
galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BZ68_STRMB
13_1_20cm_4_scaffold_1840_16
Pythium ultimum, Pythium, Pythiales, Eukaryota

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16836..17147
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pythium ultimum RepID=K3X1A6_PYTUL
Uncharacterized protein {ECO:0000313|EnsemblProtists:PYU1_T011005}; TaxID=431595 species="Eukaryota; Stramenopiles; Oomycetes; Pythiales; Pythiaceae; Pythium.;" source="Pythium ultimum DAOM BR144.;"
galactokinase
13_1_20cm_4_scaffold_1840_trna_1
unknown

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17177..17262
DNA (86bp)
transferRNA
13_1_20cm_4_scaffold_1840_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(17263..17928)
DNA (666bp) protein (222aa)
tonB; putative TonB protein; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TonB family protein
13_1_20cm_4_scaffold_1840_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18137..18481
DNA (345bp) protein (115aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_1840_19
unknown

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18576..18869
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_20cm_4_scaffold_1840_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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19005..19910
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAH0_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG91915.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
protein of unknown function DUF4098
13_1_20cm_4_scaffold_1840_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(19907..20245)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXZ8_9BACT
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=GWC2_Gemmatimonadetes_71_10_curated
two-component response regulator
Displaying 22 items

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