ggKbase home page

13_1_20cm_4_scaffold_1990

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1990_1
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..814
DNA (813bp) protein (271aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ADO72084.1}; EC=1.3.99.- {ECO:0000313|EMBL:ADO72084.1};; Acyl-CoA dehydrogenase, short-chain specific {ECO:0000313|EMBL:EAU64345.1}; EC=1.3.8.1 {ECO:0000313|EM
acdA; acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08V39_STIAD
13_1_20cm_4_scaffold_1990_2
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

820..1770
DNA (951bp) protein (317aa)
LAO/AO transport system ATPase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCB6_ANADF rbh
LAO/AO transport system ATPase {ECO:0000313|EMBL:ABS26362.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobact
LAO/AO transport system ATPase
13_1_20cm_4_scaffold_1990_3
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1799..2548
DNA (750bp) protein (250aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U990_MYXSD
ribonuclease III
13_1_20cm_4_scaffold_1990_4
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2608..3354
DNA (747bp) protein (249aa)
peptidyl-prolyl isomerase (EC:5.2.1.8); K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] Tax=RBG_16_Anaeromyxobacter_69_14_curated
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CGL4_MYXFH
cyclophilin-type peptidylprolyl cis-trans isomerase
13_1_20cm_4_scaffold_1990_5
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3351..4967
DNA (1617bp) protein (539aa)
GTPase Era n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UDL6_ANASK rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae
GTP-binding protein Era
13_1_20cm_4_scaffold_1990_6
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5079..6479
DNA (1401bp) protein (467aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=MIAB_ANASK
(dimethylallyl)adenosine tRNA methylthiotransferase
13_1_20cm_4_scaffold_1990_7
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6480..7838
DNA (1359bp) protein (453aa)
GTPase Der n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCB1_ANADF
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobact
engA; GTP-binding protein EngA
13_1_20cm_4_scaffold_1990_8
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7835..8794
DNA (960bp) protein (320aa)
TerC family membrane protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C6X8_MYXFH
Membrane protein {ECO:0000313|EMBL:AKF81933.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fu
TerC family membrane protein
13_1_20cm_4_scaffold_1990_9
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8791..9708
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Gordonia sputi NBRC 100414 RepID=H5U276_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:AJT62785.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
hypothetical protein
13_1_20cm_4_scaffold_1990_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9723..10064)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQM9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89520.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
13_1_20cm_4_scaffold_1990_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10061..11071)
DNA (1011bp) protein (337aa)
NADPH:quinone reductase (EC:1.6.5.5) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYI4_OPITP rbh
NADPH:quinone reductase and related Zn-dependent oxidoreductase
13_1_20cm_4_scaffold_1990_12
unknown

Not on your lists

comp(11085..11591)
DNA (507bp) protein (169aa)

This feature has no annotations

13_1_20cm_4_scaffold_1990_13
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11733..12542
DNA (810bp) protein (270aa)
Putative lipoprotein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TLK7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:AKF81693.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
hypothetical protein
13_1_20cm_4_scaffold_1990_14
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12542..13648
DNA (1107bp) protein (369aa)
PQQ repeat-containing protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CDI3_MYXFH
PQQ repeat-containing protein {ECO:0000313|EMBL:AEI67290.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="M
PQQ repeat-containing protein
13_1_20cm_4_scaffold_1990_15
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13645..14040
DNA (396bp) protein (132aa)
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2RSS3_9DELT
NUDIX hydrolase Tax=RBG_16_Anaeromyxobacter_69_14_curated
NUDIX family hydrolase
13_1_20cm_4_scaffold_1990_16
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14044..14853
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UIX8_ANASK
Uncharacterized protein {ECO:0000313|EMBL:ACG75550.1}; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
hypothetical protein
13_1_20cm_4_scaffold_1990_17
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14844..17348)
DNA (2505bp) protein (835aa)
exporters of the RND superfamily Tax=RBG_16_Anaeromyxobacter_69_14_curated
Exporters of the RND superfamily id=3283528 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_1990_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17426..19009
DNA (1584bp) protein (528aa)
PAS domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
Multi-sensor signal transduction histidine kinase id=3068387 bin=GWC2_Methylomirabilis_70_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sensory box histidine kinase/response regulator
13_1_20cm_4_scaffold_1990_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19006..19656
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ0_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57190.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3
LuxR family response regulator
13_1_20cm_4_scaffold_1990_20
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19735..20076
DNA (342bp) protein (114aa)
ArsR family transcriptional regulator n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZKU7_9PSEU
ArsR family transcriptional regulator {ECO:0000313|EMBL:EME61518.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis deca
Hypothetical protein
13_1_20cm_4_scaffold_1990_21
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20076..20573
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2Z2N4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EME61517.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44
activator of HSP90 ATPase 1 family protein
13_1_20cm_4_scaffold_1990_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20584..21165
DNA (582bp) protein (194aa)
Bifunctional deaminase-reductase domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS28_9GAMM
Dihydrofolate reductase {ECO:0000313|EMBL:AGG89432.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
dihydrofolate reductase
13_1_20cm_4_scaffold_1990_23
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21545..22024)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Aeromonas veronii AMC35 RepID=K1IVG9_9GAMM
hypothetical protein Tax=RBG_16_Deltaproteobacteria_54_11_curated
hypothetical protein
13_1_20cm_4_scaffold_1990_24
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22087..22848)
DNA (762bp) protein (254aa)
RES domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHW3_ANADF
RES domain protein {ECO:0000313|EMBL:ABS28309.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source
RES domain-containing protein
13_1_20cm_4_scaffold_1990_25
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22808..23188)
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:ABS28308.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
hypothetical protein id=12554620 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_20cm_4_scaffold_1990_26
unknown

Not on your lists

comp(23234..24031)
DNA (798bp) protein (266aa)

This feature has no annotations

Displaying 26 items

View Taxonomy