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13_1_20cm_4_scaffold_2014

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2014_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

95..730
DNA (636bp) protein (212aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2014_2
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(735..1436)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000369A72A
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Na+/solute symporter
13_1_20cm_4_scaffold_2014_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1489..1932)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003780283
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_20cm_4_scaffold_2014_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(1920..2111)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFN0_ACIB4
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_20cm_4_scaffold_2014_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2118..2288)
DNA (171bp) protein (57aa)
Ribosome biogenesis protein Nop10 n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=NOP10_ARCFU
RNA-binding protein Nop10p Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_20cm_4_scaffold_2014_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2293..3093)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003618409 rbh
translation initiation factor 2, alpha subunit; K03237 translation initiation factor 2 subunit 1 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
translation initiation factor 2, alpha subunit
13_1_20cm_4_scaffold_2014_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3093..3272)
DNA (180bp) protein (60aa)
30S ribosomal protein S27e n=3 Tax=Thermococcus RepID=RS27_THEON
rps27e; 30S ribosomal protein S27e; K02978 small subunit ribosomal protein S27e Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rps27e; 30S ribosomal protein S27
13_1_20cm_4_scaffold_2014_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3269..3556)
DNA (288bp) protein (96aa)
50S ribosomal protein L44e n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFK5_PYRYC
rpl44e; 50S ribosomal protein L44e Tax=RBG_16_Euryarchaeota_67_27_curated
50S ribosomal protein L44e
13_1_20cm_4_scaffold_2014_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

3765..4130
DNA (366bp) protein (122aa)
Transcriptional regulator, TrmB n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5S4_9EURY
transcriptional regulator, TrmB Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
transcriptional regulator, TrmB
13_1_20cm_4_scaffold_2014_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(4114..4674)
DNA (561bp) protein (187aa)
rpiA; ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpiA; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4M5_SPHTD
13_1_20cm_4_scaffold_2014_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(4676..5368)
DNA (693bp) protein (231aa)
Creatininase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IEI1_ACIB4
creatininase Tax=RBG_16_Euryarchaeota_68_12_curated
Creatininase
13_1_20cm_4_scaffold_2014_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

5570..6022
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TR10_METAC
ATP-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_20cm_4_scaffold_2014_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(6027..6494)
DNA (468bp) protein (156aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein Bm3-1_04649 id=4449776 bin=GWC2_Chloroflexi_73_18 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
13_1_20cm_4_scaffold_2014_trna_1
unknown

Not on your lists

comp(6533..6627)
DNA (95bp)
transferRNA
13_1_20cm_4_scaffold_2014_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6668..7621)
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035D7D20
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_2014_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(7668..8225)
DNA (558bp) protein (186aa)
putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Non-canonical purine NTP pyrophosphatase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LK92_THEBM
xanthosine/inosine triphosphate pyrophosphatase
13_1_20cm_4_scaffold_2014_16
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(8222..8833)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037E55C1
O-sialoglycoprotein endopeptidase Tax=RBG_16_Euryarchaeota_67_27_curated
O-sialoglycoprotein endopeptidase
13_1_20cm_4_scaffold_2014_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(8823..10775)
DNA (1953bp) protein (651aa)
DNA repair helicase rad3; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] Tax=RBG_16_Euryarchaeota_67_27_curated
Putative helicase n=1 Tax=uncultured archaeon RepID=D1JIC7_9ARCH rbh
ATP dependent helicase
13_1_20cm_4_scaffold_2014_18
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

10908..11609
DNA (702bp) protein (234aa)
Peptidase M50 n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FJF6_9EURY
peptidase M50 Tax=RBG_16_Euryarchaeota_67_27_curated
peptidase family M50
13_1_20cm_4_scaffold_2014_19
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(11616..12347)
DNA (732bp) protein (244aa)
hypothetical protein; K06898 Tax=RBG_16_Euryarchaeota_67_27_curated
NCAIR mutase-like protein; K06898 id=14625900 bin=bin7_NC10_sister species=Clostridium sp. BNL1100 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
NCAIR mutase-like protein
13_1_20cm_4_scaffold_2014_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(12367..12984)
DNA (618bp) protein (206aa)
3-hexulose-6-phosphate synthase (EC:4.1.2.-)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036404AA
bifunctional hexulose-6-phosphate synthase/ribonuclease regulator Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 21 items

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