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13_1_20cm_4_scaffold_2129

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2129_1
unknown

Not on your lists

comp(3..74)
DNA (72bp) protein (24aa)

This feature has no annotations

13_1_20cm_4_scaffold_2129_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(71..655)
DNA (585bp) protein (195aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q9_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_2129_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(648..2084)
DNA (1437bp) protein (479aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK15_9GAMM
phospholipase D/transphosphatidylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
13_1_20cm_4_scaffold_2129_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2081..2671)
DNA (591bp) protein (197aa)
Metal dependent phosphohydrolase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJK6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metal dependent phosphohydrolase
13_1_20cm_4_scaffold_2129_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2716..3612)
DNA (897bp) protein (299aa)
asparagine synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
asparagine synthase id=24424238 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
asparagine synthase
13_1_20cm_4_scaffold_2129_6
unknown

Not on your lists

3671..4441
DNA (771bp) protein (257aa)

This feature has no annotations

13_1_20cm_4_scaffold_2129_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4292..5905)
DNA (1614bp) protein (538aa)
4-Amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KBR0_CUPNH id=5223931 bin=16ft_combo_ws3_JS1 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dolichyl-phosphate-mannose-protein mannosyltransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
13_1_20cm_4_scaffold_2129_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6090..7388)
DNA (1299bp) protein (433aa)
Sugar phosphate permease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9I8_SINAD
Sugar phosphate permease {ECO:0000313|EMBL:AGA26059.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera ac
sugar phosphate permease
13_1_20cm_4_scaffold_2129_9
unknown

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7573..8031
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_20cm_4_scaffold_2129_10
RLO_PLX_64_10, Bacteria

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8028..9152
DNA (1125bp) protein (375aa)
WD-40-like beta propeller repeat-containing protein; K03641 TolB protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein
Protein TolB id=4952087 bin=GWC2_Chloroflexi_73_18 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_20cm_4_scaffold_2129_11
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

9263..9484
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C77F0
hypothetical protein Tax=RBG_16_Chloroflexi_56_8_curated
hypothetical protein
13_1_20cm_4_scaffold_2129_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9487..11055
DNA (1569bp) protein (523aa)
Beta-lactamase domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XGG4_VARPD
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AGU51220.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
beta-lactamase domain-containing protein
13_1_20cm_4_scaffold_2129_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11066..12232
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EC13D
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:AHG89157.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
glycoside hydrolase family 29 (alpha-L-fucosidase)
13_1_20cm_4_scaffold_2129_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12294..12683
DNA (390bp) protein (130aa)
Holliday junction resolvase-like protein n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1L195_9EURY
holliday junction resolvase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Holliday junction resolvase
13_1_20cm_4_scaffold_2129_15
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12737..14833
DNA (2097bp) protein (699aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036C7341
Uncharacterized protein {ECO:0000313|EMBL:AGC46318.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
hypothetical protein
13_1_20cm_4_scaffold_2129_16
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14836..15387)
DNA (552bp) protein (184aa)
Haloacid dehalogenase, type II n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NGY1_ROSCS
Haloacid dehalogenase, type II {ECO:0000313|EMBL:ABU56728.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseifle
type II haloacid dehalogenase
13_1_20cm_4_scaffold_2129_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15399..16331)
DNA (933bp) protein (311aa)
acyl-CoA synthetase/AMP-acid ligase (EC:6.2.1.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acyl-CoA synthetase/AMP-acid ligase (EC:6.2.1.17)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003631A9F
13_1_20cm_4_scaffold_2129_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16469..16834
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003647105
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_4_scaffold_2129_19
Rheinheimera sp. A13L, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17371..18243)
DNA (873bp) protein (291aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Rheinheimera sp. A13L RepID=F7NSW8_9GAMM
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EGM78997.1}; TaxID=506534 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" sour
beta-lactamase
Displaying 19 items

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