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13_1_20cm_4_scaffold_2806

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2806_1
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..906
DNA (906bp) protein (302aa)
ABC transporter, substrate-binding protein, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166U8_ROSDO
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:AEI93711.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;"
ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_2806_2
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1603..2412
DNA (810bp) protein (270aa)
Putative ABC transporter permease protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZHV3_ROSLO
Putative ABC transporter permease protein {ECO:0000313|EMBL:AEI93713.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="
ABC transporter permease
13_1_20cm_4_scaffold_2806_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2428..2910
DNA (483bp) protein (161aa)
ureidoglycolate hydrolase; K01483 ureidoglycolate hydrolase [EC:3.5.3.19] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Ureidoglycolate hydrolase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKR1_XANP2
ureidoglycolate hydrolase
13_1_20cm_4_scaffold_2806_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2916..3860
DNA (945bp) protein (315aa)
Polysaccharide deacetylase family protein, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166U5_ROSDO rbh
Chitin deacetylase {ECO:0000313|EMBL:KJC54109.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTS
polysaccharide deacetylase
13_1_20cm_4_scaffold_2806_5
RLO_RIF02_62_27, RIF2, Bacteria

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comp(3900..4685)
DNA (786bp) protein (262aa)
short-chain dehydrogenase/reductase sdr Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
Short-chain dehydrogenase id=3202782 bin=GWC2_Methylomirabilis_70_16 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
13_1_20cm_4_scaffold_2806_6
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4685..5050)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QK14_ARTGO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB13254.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12
hypothetical protein
13_1_20cm_4_scaffold_2806_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5131..5610
DNA (480bp) protein (160aa)
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
Ring-cleavage extradiol dioxygenase id=2050726 bin=GWD2_Deltaproteobacteria_55_8 species=Mycobacterium fortuitum genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_20cm_4_scaffold_2806_8
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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5610..6035
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R9I5_9RHOB
cupin Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
cupin
13_1_20cm_4_scaffold_2806_9
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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6046..6690
DNA (645bp) protein (215aa)
Methyltransferase type 11 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GB91_CHLAD
Methyltransferase type 11 {ECO:0000313|EMBL:ACL24719.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflex
type 11 methyltransferase
13_1_20cm_4_scaffold_2806_10
unknown

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comp(7038..7223)
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_20cm_4_scaffold_2806_11
unknown

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comp(7235..7549)
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_20cm_4_scaffold_2806_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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7740..8693
DNA (954bp) protein (318aa)
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2806_13
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8686..9531
DNA (846bp) protein (282aa)
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
Binding-protein-dependent transport systems inner membrane component id=3247809 bin=GWF2_Methylomirabilis_70_14 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter permease
13_1_20cm_4_scaffold_2806_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9542..10852
DNA (1311bp) protein (437aa)
Putative ABC-type sugar transport system,periplasmic-binding component n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJ66_9CHLR
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative sugar uptake ABC transporter periplasmic solute-binding protein
13_1_20cm_4_scaffold_2806_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10936..11760)
DNA (825bp) protein (275aa)
appC; oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Binding-protein-dependent transport systems inner membrane component id=4948703 bin=GWC2_Methylomirabilis_70_24 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptide ABC transporter permease
13_1_20cm_4_scaffold_2806_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11757..12680)
DNA (924bp) protein (308aa)
dppB; dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein Tax=CSP1_6_Rokubacteria
dppB; dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein id=14627052 bin=bin7_NC10_sister species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transport systems inner membrane component
13_1_20cm_4_scaffold_2806_17
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12697..13350)
DNA (654bp) protein (218aa)
Microsomal dipeptidase (EC:3.4.13.19)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TM92_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EPX99774.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-0
Displaying 17 items

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