ggKbase home page

13_1_20cm_4_scaffold_2940

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2940_1
Halovivax ruber, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..113)
DNA (111bp) protein (37aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70) RepID=L0ICU2_HALRX
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:AGB16653.1}; Flags: Precursor;; TaxID=797302 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natri
ABC-type branched-chain amino acid transport systems, ATPase component
13_1_20cm_4_scaffold_2940_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(106..789)
DNA (684bp) protein (228aa)
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family id=2654104 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
13_1_20cm_4_scaffold_2940_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(860..1648)
DNA (789bp) protein (263aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4547691 bin=GWF2_Methylomirabilis_70_14 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_20cm_4_scaffold_2940_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2014..3675)
DNA (1662bp) protein (554aa)
amino acid ABC transporter Tax=GWA2_Rokubacteria_70_23_curated
ABC-type transporter, integral membrane subunit id=4547723 bin=GWF2_Methylomirabilis_70_14 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_20cm_4_scaffold_2940_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3692..4690)
DNA (999bp) protein (333aa)
aminocarboxymuconate-semialdehyde decarboxylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Aminocarboxymuconate-semialdehyde decarboxylase id=1955670 bin=GWD2_Deltaproteobacteria_55_8 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aminocarboxymuconate-semialdehyde decarboxylase
13_1_20cm_4_scaffold_2940_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4819..5562
DNA (744bp) protein (248aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polysaccharide deacetylase
13_1_20cm_4_scaffold_2940_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5559..6146)
DNA (588bp) protein (196aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=4177610 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_2940_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6343..7290)
DNA (948bp) protein (316aa)
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3830373 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
13_1_20cm_4_scaffold_2940_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7294..8514)
DNA (1221bp) protein (407aa)
serine--pyruvate transaminase (EC:2.6.1.51) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase id=3830371 bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2940_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8582..9022)
DNA (441bp) protein (147aa)
Lipid A biosynthesis domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPQ0_9BACT
Lipid A biosynthesis domain protein {ECO:0000313|EMBL:EEF58173.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;"
membrane protein
13_1_20cm_4_scaffold_2940_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9051..9407)
DNA (357bp) protein (119aa)
transcriptional regulator y4dJ Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_20cm_4_scaffold_2940_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9438..9725)
DNA (288bp) protein (96aa)
anti-ECFsigma factor, ChrR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Allophanate hydrolase id=3830286 bin=GWA2_Methylomirabilis_73_35 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2940_13
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

comp(9722..10030)
DNA (309bp) protein (103aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein id=4819262 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Rieske (2Fe-2S) domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
13_1_20cm_4_scaffold_2940_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10030..10428)
DNA (399bp) protein (133aa)
DSBA-like thioredoxin domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
DSBA-like thioredoxin domain-containing protein id=3830987 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DSBA oxidoreductase
13_1_20cm_4_scaffold_2940_15
unknown

Not on your lists

comp(10465..10686)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_20cm_4_scaffold_2940_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10687..11148
DNA (462bp) protein (154aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2940_17
unknown

Not on your lists

11490..11924
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_20cm_4_scaffold_2940_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11983..12231)
DNA (249bp) protein (83aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3830282 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 18 items

View Taxonomy