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13_1_20cm_4_scaffold_3666

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3666_1
unknown

Not on your lists

comp(2..250)
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_20cm_4_scaffold_3666_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(247..1242)
DNA (996bp) protein (332aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3779692 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_3666_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1239..1388)
DNA (150bp) protein (50aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_3666_4
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1388..1777)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034B878D
PAS domain S-box {ECO:0000313|EMBL:AFZ20559.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
PAS domain-containing protein
13_1_20cm_4_scaffold_3666_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1826..2044
DNA (219bp) protein (73aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3666_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2062..2562
DNA (501bp) protein (167aa)
cyclic nucleotide-binding protein (EC:3.1.3.16)
cyclic nucleotide-binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cyclic nucleotide-binding protein id=3779687 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3666_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2632..3582
DNA (951bp) protein (317aa)
peptidase M50 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_3666_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3546..3722
DNA (177bp) protein (59aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=3779682 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3666_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3726..4898)
DNA (1173bp) protein (391aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3666_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4924..6321
DNA (1398bp) protein (466aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidase id=4492352 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
amidase
13_1_20cm_4_scaffold_3666_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6340..7047
DNA (708bp) protein (236aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_3666_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7321..8337
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase id=3919670 bin=GWF2_Methylomirabilis_70_14 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3666_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8466..9311
DNA (846bp) protein (282aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=3919666 bin=GWF2_Methylomirabilis_70_14 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein
13_1_20cm_4_scaffold_3666_trna_1
unknown

Not on your lists

9337..9408
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_3666_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9729..11084
DNA (1356bp) protein (452aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWC2_Rokubacteria_70_16_curated
Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase id=4178158 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_3666_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11209..11670
DNA (462bp) protein (154aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infC; translation initiation factor IF-3
13_1_20cm_4_scaffold_3666_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


11683..11880
DNA (198bp) protein (66aa)
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L35 id=3919663 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Megamonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L35
13_1_20cm_4_scaffold_3666_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


11899..12255
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplT; 50S ribosomal protein L20
13_1_20cm_4_scaffold_3666_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


12259..13284
DNA (1026bp) protein (342aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
pheS; phenylalanyl-tRNA synthetase subunit alpha
13_1_20cm_4_scaffold_3666_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13306..14568
DNA (1263bp) protein (421aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=14627866 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pheT; phenylalanyl-tRNA ligase subunit beta
Displaying 20 items

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