ggKbase home page

13_1_20cm_4_scaffold_371

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_371_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..264)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B5012
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_20cm_4_scaffold_371_2
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(448..867)
DNA (420bp) protein (140aa)
Mov34/MPN/PAD-1 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Mov34/MPN/PAD-1 family protein id=1244434 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
13_1_20cm_4_scaffold_371_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(864..1793)
DNA (930bp) protein (310aa)
cysteine synthase-like protein; K12339 cysteine synthase B [EC:2.5.1.47] Tax=RBG_16_Euryarchaeota_68_13_curated
cysteine synthase (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVI9_9BACT
13_1_20cm_4_scaffold_371_4
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(1806..2198)
DNA (393bp) protein (131aa)
SUF system FeS cluster assembly protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE34_NITGG
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RBG_16_Euryarchaeota_68_13_curated
nifU; SUF system FeS cluster assembly protein
13_1_20cm_4_scaffold_371_5
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(2198..3463)
DNA (1266bp) protein (422aa)
cysteine desulfurase SufS; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=RBG_16_Euryarchaeota_68_13_curated
cysteine desulfurase n=1 Tax=Ureibacillus thermosphaericus RepID=UPI0002D78C09 rbh
SufS subfamily cysteine desulfurase
13_1_20cm_4_scaffold_371_6
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3499..4830)
DNA (1332bp) protein (444aa)
FeS cluster assembly protein SufB n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9N0_NITGG
sufB; FeS cluster assembly protein SufB Tax=RBG_16_RIF_CHLX_72_14_curated
Iron-regulated ABC transporter membrane component SufB
13_1_20cm_4_scaffold_371_7
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

comp(4833..5282)
DNA (450bp) protein (150aa)
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
hypothetical protein id=14431319 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
NifU family SUF system FeS assembly protein
13_1_20cm_4_scaffold_371_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(5338..6696)
DNA (1359bp) protein (453aa)
iron ABC transporter permease; K09015 Fe-S cluster assembly protein SufD Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD id=14425452 bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP rbh
sufD; FeS assembly protein SufD
13_1_20cm_4_scaffold_371_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6693..7463)
DNA (771bp) protein (257aa)
FeS assembly ATPase SufC (EC:3.6.3.27); K09013 Fe-S cluster assembly ATP-binding protein id=14632747 bin=bin9_gal15 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
sufC; ABC transporter involved in Fe-S cluster assembly SufC, ATP-binding protein; K09013 Fe-S cluster assembly ATP-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
sufC; FeS assembly ATPase SufC
13_1_20cm_4_scaffold_371_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(7493..8944)
DNA (1452bp) protein (484aa)
Iron-regulated ABC transporter membrane component SufB n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123Y1_POLSJ
cysteine desulfurase; K09014 Fe-S cluster assembly protein SufB Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cysteine desulfurase activator complex subunit SufB
13_1_20cm_4_scaffold_371_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9114..9455
DNA (342bp) protein (114aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08UI9_STIAD
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
iron-sulfur cluster assembly accessory protein
13_1_20cm_4_scaffold_371_12
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(9467..10630)
DNA (1164bp) protein (388aa)
CoB--CoM heterodisulfide reductase n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T447_9EURY rbh
CoB--CoM heterodisulfide reductase Tax=RBG_16_Euryarchaeota_68_13_curated
CoB--CoM heterodisulfide reductase
13_1_20cm_4_scaffold_371_13
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(10645..11163)
DNA (519bp) protein (173aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_371_14
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11256..11564)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TN95_METAC
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_20cm_4_scaffold_371_15
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(11630..12097)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Thermus islandicus RepID=UPI0003B495D1
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_20cm_4_scaffold_371_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(12134..13117)
DNA (984bp) protein (328aa)
methionine synthase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
methionine synthase (EC:2.1.1.14)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MKH2_9BACT
13_1_20cm_4_scaffold_371_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(13114..13911)
DNA (798bp) protein (266aa)
methylcobalamin:homocysteine methyltransferase (EC:2.1.1.-) Tax=RBG_16_Euryarchaeota_68_13_curated
methylcobalamin:homocysteine methyltransferase (EC:2.1.1.-) id=14429989 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
methylcobalamin:homocysteine methyltransferase (EC:2.1.1.-)
13_1_20cm_4_scaffold_371_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(14078..14917)
DNA (840bp) protein (280aa)
NADH dehydrogenase subunit I (EC:1.6.99.5) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
NADH dehydrogenase subunit I (EC:1.6.99.5)
NADH dehydrogenase subunit I n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T7I6_9EURY
13_1_20cm_4_scaffold_371_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(14892..15260)
DNA (369bp) protein (123aa)
NADH dehydrogenase subunit B (EC:1.6.99.5) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00038296B5
Displaying 19 items

View Taxonomy