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13_1_20cm_4_scaffold_551

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_551_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(181..789)
DNA (609bp) protein (203aa)
Response regulator, LuxR family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBT9_9BACT
LuxR family response regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
LuxR family response regulator
13_1_20cm_4_scaffold_551_2
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(954..1397)
DNA (444bp) protein (148aa)
sensory transduction regulatory protein Tax=RBG_13_Nitrospirae_43_8_curated
response regulator receiver protein id=14426277 bin=bin1_lowGC species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein
13_1_20cm_4_scaffold_551_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1458..3407)
DNA (1950bp) protein (650aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PAS/PAC sensor hybrid histidine kinase id=4942499 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative PAS/PAC sensor protein
13_1_20cm_4_scaffold_551_trna_1
unknown

Not on your lists

comp(3423..3495)
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_551_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3642..4187)
DNA (546bp) protein (182aa)
PAS domain S-box n=2 Tax=Singulisphaera acidiphila RepID=L0D912_SINAD
PAS domain S-box {ECO:0000313|EMBL:AGA25318.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila
PAS domain-containing protein
13_1_20cm_4_scaffold_551_5
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4184..4552)
DNA (369bp) protein (123aa)
two-component regulatory system response regulator protein Tax=RBG_13_Nitrospirae_41_22_curated
Response regulator receiver protein id=4401364 bin=GWC2_Spirochaete_52_13 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
Two component transcriptional regulatory protein devR (luxR/uhpA-family)
13_1_20cm_4_scaffold_551_6
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4710..5342)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q3S4_DESAF
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EMG38953.1}; TaxID=1262666 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desul
two component transcriptional regulator, LuxR family
13_1_20cm_4_scaffold_551_7
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5339..7654)
DNA (2316bp) protein (772aa)
Response regulator/sensory box histidine kinase n=2 Tax=Burkholderia thailandensis RepID=I6ABG9_BURTH rbh
Response regulator {ECO:0000313|EMBL:AJY40116.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 20027
response regulator
13_1_20cm_4_scaffold_551_8
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(7691..8566)
DNA (876bp) protein (292aa)
hypothetical protein Tax=RIFOXYC12_FULL_TA06_54_24_curated
hypothetical protein id=7202063 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
13_1_20cm_4_scaffold_551_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8571..10124)
DNA (1554bp) protein (518aa)
histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
Response regulator receiver id=3068376 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine kinase
13_1_20cm_4_scaffold_551_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10124..12064)
DNA (1941bp) protein (647aa)
UvrABC system protein A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9P0_GEMAT
uvrA; UvrABC system protein A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
excinuclease ABC, A subunit
13_1_20cm_4_scaffold_551_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

13133..13891
DNA (759bp) protein (253aa)
Putative membrane protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8R7_SORC5
hypothetical protein; K07027 Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_4_scaffold_551_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

13983..15530
DNA (1548bp) protein (516aa)
FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits n=1 Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UPK9_TSUPD
FHA domain-containing protein; K02283 pilus assembly protein CpaF Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits
13_1_20cm_4_scaffold_551_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

15609..16322
DNA (714bp) protein (238aa)
putative serine/threonine protein phosphatase (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative serine/threonine protein phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9N8_GEMAT
protein phosphatase 2C domain protein
13_1_20cm_4_scaffold_551_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16327..18975)
DNA (2649bp) protein (883aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Geobacter sp. (strain M21) RepID=PCKA_GEOSM
hypothetical protein; K06885 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_551_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18995..21262)
DNA (2268bp) protein (756aa)
malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XW7_SOLUE
phosphate acetyl/butaryl transferase
13_1_20cm_4_scaffold_551_16
unknown

Not on your lists

comp(21320..21913)
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_20cm_4_scaffold_551_17
unknown

Not on your lists

comp(21943..22593)
DNA (651bp) protein (217aa)

This feature has no annotations

13_1_20cm_4_scaffold_551_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22596..24242)
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM3_GEMAT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_551_19
unknown

Not on your lists

comp(24264..25997)
DNA (1734bp) protein (578aa)

This feature has no annotations

13_1_20cm_4_scaffold_551_20
unknown

Not on your lists

comp(26563..26886)
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_20cm_4_scaffold_551_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(26892..27719)
DNA (828bp) protein (276aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XT04_9BACT
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ABC-3 protein
13_1_20cm_4_scaffold_551_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(27736..28776)
DNA (1041bp) protein (347aa)
ABC-type metal ion transporter, periplasmic subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XT05_9BACT
troA; periplasmic zinc binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
troA; periplasmic zinc binding protein
13_1_20cm_4_scaffold_551_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(28778..29149)
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Displaying 24 items

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