ggKbase home page

13_1_20cm_4_scaffold_638

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_638_1
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28..1104)
DNA (1077bp) protein (359aa)
Peptidase M20 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J8K4_ANAD2 rbh
Putative succinyl-diaminopimelate desuccinylase DapE {ECO:0000313|EMBL:GAO03132.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobact
succinyl-diaminopimelate desuccinylase
13_1_20cm_4_scaffold_638_2
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1101..1976)
DNA (876bp) protein (292aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PFP0_9DELT
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:KFE60849.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; C
13_1_20cm_4_scaffold_638_3
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(1973..2680)
DNA (708bp) protein (236aa)
Succinyldiaminopimelate transaminase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T5X7_THEA1
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:ADU96561.1}; TaxID=648996 species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammonif
succinyldiaminopimelate transaminase
13_1_20cm_4_scaffold_638_4
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2942..3721)
DNA (780bp) protein (260aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI000360726C
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:EXU91664.1}; TaxID=1395572 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
13_1_20cm_4_scaffold_638_5
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3718..4527)
DNA (810bp) protein (270aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102};; TaxID=404589 spec
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=DAPB_ANADF
dihydrodipicolinate reductase
13_1_20cm_4_scaffold_638_6
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4524..5258)
DNA (735bp) protein (245aa)
dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=2550769 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_1_20cm_4_scaffold_638_7
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5340..6587)
DNA (1248bp) protein (416aa)
Diaminopimelate decarboxylase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UHY2_ANASK
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
diaminopimelate decarboxylase
13_1_20cm_4_scaffold_638_8
unknown

Not on your lists

comp(6584..6730)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_4_scaffold_638_9
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6730..8763)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MT31_CORCM rbh
Uncharacterized protein {ECO:0000313|EMBL:AFE06947.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cor
hypothetical protein
13_1_20cm_4_scaffold_638_10
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8891..9496
DNA (606bp) protein (202aa)
Nucleoside recognition domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H766_ANADF
Nucleoside recognition domain protein {ECO:0000313|EMBL:ABS24562.1}; Flags: Precursor;; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxob
nucleoside recognition domain-containing protein
13_1_20cm_4_scaffold_638_11
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9487..10056
DNA (570bp) protein (190aa)
Nucleoside recognition domain protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKM9_THEM7
Nucleoside recognition domain protein {ECO:0000313|EMBL:ADU51237.1}; Flags: Precursor;; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis
nucleoside recognition domain-containing protein
13_1_20cm_4_scaffold_638_12
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10111..11193
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MS69_CORCM
Uncharacterized protein {ECO:0000313|EMBL:AFE04000.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cor
hypothetical protein
13_1_20cm_4_scaffold_638_13
unknown

Not on your lists

11346..11681
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_4_scaffold_638_14
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

11686..12336
DNA (651bp) protein (217aa)
ddpX; D-alanyl-D-alanine dipeptidase (EC:3.4.-.-)
D-alanyl-D-alanine dipeptidase Tax=GWC2_Elusimicrobia_65_9_curated
Putative D-alanyl-D-alanine dipeptidase id=5014919 bin=GWA2_Elusimicrobia_66_18 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
13_1_20cm_4_scaffold_638_15
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12339..13937)
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U1W5_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AGC42786.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
hypothetical protein
13_1_20cm_4_scaffold_638_16
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13983..14714
DNA (732bp) protein (244aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Putative uncharacterized protein (Fragment) id=3570836 bin=GWA2_OP3_53_43 species=uncultured bacterium BAC10-4 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
13_1_20cm_4_scaffold_638_17

Not on your lists

14760..15539
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=uncultured bacterium FPPP_13C3 RepID=S4W4H2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGO87987.1}; TaxID=1343845 species="Bacteria; environmental samples.;" source="uncultured bacterium FPPP_13C3.;"
membrane protein
13_1_20cm_4_scaffold_638_18
unknown

Not on your lists

15587..15937
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_20cm_4_scaffold_638_19
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15946..16707
DNA (762bp) protein (254aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterinea
Pseudouridine synthase, RluD n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IME3_ANADE
pseudouridine synthase
13_1_20cm_4_scaffold_638_20
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16792..17001
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:KHE90540.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="
13_1_20cm_4_scaffold_638_21
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17131..18192
DNA (1062bp) protein (354aa)
M16 family peptidase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U2W6_MYXSD
M16 family peptidase {ECO:0000313|EMBL:AGC42533.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcu
M16 family peptidase
Displaying 21 items

View Taxonomy