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13_1_20cm_4_scaffold_6538

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_6538_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..338)
DNA (336bp) protein (112aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
L-threonine aldolase (EC:4.1.2.5)
13_1_20cm_4_scaffold_6538_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(338..1075)
DNA (738bp) protein (246aa)
tetratricopeptide TPR_2 repeat protein; K05807 putative lipoprotein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
outer membrane assembly lipoprotein
13_1_20cm_4_scaffold_6538_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1213..2454
DNA (1242bp) protein (414aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2868867 bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_6538_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2494..3756
DNA (1263bp) protein (421aa)
multidrug resistance efflux pump Tax=GWA2_Rokubacteria_73_35_curated
Secretion protein HlyD family protein id=4213646 bin=GWA2_Methylomirabilis_73_35 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multidrug resistance efflux pump
13_1_20cm_4_scaffold_6538_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3840..5450)
DNA (1611bp) protein (537aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=GWC2_Rokubacteria_70_16_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3010429 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
13_1_20cm_4_scaffold_6538_6
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(5460..5822)
DNA (363bp) protein (121aa)
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
hypothetical protein id=1247387 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_20cm_4_scaffold_6538_7

Not on your lists

5957..6724
DNA (768bp) protein (256aa)
Maleate cis-trans isomerase n=1 Tax=uncultured Chloroflexi bacterium HF0500_03M05 RepID=E0XY61_9CHLR
Maleate cis-trans isomerase {ECO:0000313|EMBL:ADI19352.1}; TaxID=710737 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0500_03M05.;"
Asp/Glu/hydantoin racemase
13_1_20cm_4_scaffold_6538_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6721..7512
DNA (792bp) protein (264aa)
SMP-30/gluconolaconase/LRE domain-containing protein; K01053 gluconolactonase [EC:3.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gluconolactonase (EC:3.1.1.17)
Gluconolactonase id=3716772 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_6538_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7516..8010)
DNA (495bp) protein (165aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulator, ArsR family id=4213638 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyltransferase GCN5
13_1_20cm_4_scaffold_6538_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8033..8785
DNA (753bp) protein (251aa)
putative methyltransferase type 11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=4213634 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative methyltransferase
13_1_20cm_4_scaffold_6538_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8816..9799
DNA (984bp) protein (328aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-3-phosphoglycerate dehydrogenase
13_1_20cm_4_scaffold_6538_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9809..10357
DNA (549bp) protein (183aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_6538_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10336..10464
DNA (129bp) protein (43aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_6538_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10468..11175
DNA (708bp) protein (236aa)
putative regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TIGR00370 family protein id=4213628 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein
13_1_20cm_4_scaffold_6538_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11172..12107
DNA (936bp) protein (312aa)
putative regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein
13_1_20cm_4_scaffold_6538_16
GWC2_Methylomirabilis_70_24, GWC2_Methylomirabilis_70_24, GWC2_Methylomirabilis_70_24, GWC2_Methylomirabilis_70_24, Methylomirabilis, Bacteria

Not on your lists

comp(12337..12762)
DNA (426bp) protein (142aa)
id=4543818 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_6538_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

12882..13313
DNA (432bp) protein (144aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
glutamate-1-semialdehyde aminotransferase
13_1_20cm_4_scaffold_6538_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13313..13879
DNA (567bp) protein (189aa)
Luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
Luciferase-like monooxygenase id=2589433 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein
13_1_20cm_4_scaffold_6538_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13827..14201
DNA (375bp) protein (125aa)
Luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
Luciferase-like monooxygenase id=2589433 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Luciferase-like monooxygenase
13_1_20cm_4_scaffold_6538_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14215..14637
DNA (423bp) protein (141aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Uncharacterized protein id=4543822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_6538_21
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..15028)
DNA (381bp) protein (127aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00158471}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00158471};; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; P
Two-component hybrid sensor and regulator n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JK76_9PSED
chemotaxis protein
13_1_20cm_4_scaffold_6538_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15041..16312
DNA (1272bp) protein (424aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=GWA2_Rokubacteria_73_35_curated
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase id=4193474 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_6538_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16332..16727
DNA (396bp) protein (132aa)
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=GWA2_Rokubacteria_73_35_curated
glycine cleavage system protein H id=4193475 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gcvH; Glycine cleavage system H protein
13_1_20cm_4_scaffold_6538_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16727..17029
DNA (303bp) protein (101aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=14628076 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (EC:1.4.4.2)
Displaying 24 items

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