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13_1_20cm_4_scaffold_6953

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_6953_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..930
DNA (930bp) protein (310aa)
Kelch repeat type 1-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Kelch repeat-containing protein id=3960133 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Kelch repeat-containing protein
13_1_20cm_4_scaffold_6953_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

927..1580
DNA (654bp) protein (218aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Tetratricopeptide TPR_2 id=3960130 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_6953_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1580..2263
DNA (684bp) protein (228aa)
putative transferase protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable transferase protein id=4424806 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative transferase protein
13_1_20cm_4_scaffold_6953_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2263..3093
DNA (831bp) protein (277aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha/beta hydrolase fold protein id=3960128 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
alpha/beta hydrolase fold protein
13_1_20cm_4_scaffold_6953_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3090..3524
DNA (435bp) protein (145aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
GCN5-related N-acetyltransferase id=3960125 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_6953_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3592..3873
DNA (282bp) protein (94aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=3960122 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_6953_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3946..4197)
DNA (252bp) protein (84aa)
Transposase, putative Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transposase, putative id=3960120 bin=GWA2_Methylomirabilis_73_35 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_6953_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4369..4743)
DNA (375bp) protein (125aa)
Fis family two component sigma-54 specific transcriptional regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein id=14626491 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
two component sigma-54 specific Fis family transcriptional regulator
13_1_20cm_4_scaffold_6953_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4740..6320)
DNA (1581bp) protein (527aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=3960116 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative alpha-isopropylmalate/homocitrate synthase family transferase
13_1_20cm_4_scaffold_6953_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6408..7604)
DNA (1197bp) protein (399aa)
CaiB/BaiF family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
CaiB/BaiF family protein id=14626488 bin=bin7_NC10_sister species=Bordetella bronchiseptica genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
CaiB/BaiF family protein
13_1_20cm_4_scaffold_6953_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7591..8019)
DNA (429bp) protein (143aa)
id=14626487 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14626487 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_6953_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8016..9029)
DNA (1014bp) protein (338aa)
Acetyl-CoA acetyltransferase-like protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWA2_Rokubacteria_73_35_curated
propanoyl-CoA C-acyltransferase (EC:2.3.1.176)
Acetyl-CoA acetyltransferase-like protein id=3960112 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_6953_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9179..9415)
DNA (237bp) protein (79aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Sigma-54 dependent transcriptional regulator, Fis family id=3992856 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_6953_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9534..9707)
DNA (174bp) protein (58aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
7Fe ferredoxin id=14626484 bin=bin7_NC10_sister species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
13_1_20cm_4_scaffold_6953_15
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9841..10737)
DNA (897bp) protein (299aa)
uncharacterized LOC100637730 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
uncharacterized LOC100637730 id=14626483 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutathione transport system permease GsiD
13_1_20cm_4_scaffold_6953_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10737..11690)
DNA (954bp) protein (318aa)
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Putative peptide ABC transporter permease protein id=4119975 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
gsiC; glutathione transport system permease GsiC
13_1_20cm_4_scaffold_6953_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11875..13179)
DNA (1305bp) protein (435aa)
ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Probable ABC transporter substrate binding protein id=3960026 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_6953_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13213..13695)
DNA (483bp) protein (161aa)
ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Probable ABC transporter substrate binding protein id=3880333 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
Displaying 18 items

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