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13_1_20cm_4_scaffold_710

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_710_1
Thermococcus kodakarensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(3..368)
DNA (366bp) protein (122aa)
Intein/rRNA intron-related DNA endonuclease n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JGJ5_THEKO
Intein/rRNA intron-related DNA endonuclease {ECO:0000313|EMBL:BAD85439.1}; TaxID=69014 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococc
intein/rRNA intron-related DNA endonuclease
13_1_20cm_4_scaffold_710_2
unknown

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comp(693..935)
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_20cm_4_scaffold_710_3
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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945..1517
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003643B83
Strain A contig00006, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ55671.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
hypothetical protein
13_1_20cm_4_scaffold_710_4
RBG_16_Archaea_50_20_curated, Archaea

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1810..2355
DNA (546bp) protein (182aa)
Putative HEAT repeat-containing PBS lyase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKC1_NITGG
HEAT repeat-containing PBS lyase Tax=RBG_16_Archaea_50_20_curated
putative HEAT repeat-containing PBS lyase
13_1_20cm_4_scaffold_710_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2414..3475
DNA (1062bp) protein (354aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Met-10+ like protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AF65_PYRYC
hypothetical protein
13_1_20cm_4_scaffold_710_6
Methanobrevibacter sp. AbM4, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(3472..3891)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter sp. AbM4 RepID=R9SIU6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AGN16627.1}; TaxID=224719 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrev
hypothetical protein
13_1_20cm_4_scaffold_710_7
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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3996..4166
DNA (171bp) protein (57aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EED9_PYRF1
13_1_20cm_4_scaffold_710_8
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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4194..4649
DNA (456bp) protein (152aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RBG_16_Bathyarchaeota_48_13_curated
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBC2_METEZ
13_1_20cm_4_scaffold_710_9
RBG_16_Archaea_50_20_curated, Archaea

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comp(4646..5677)
DNA (1032bp) protein (344aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037087F5
endonuclease
13_1_20cm_4_scaffold_710_10
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

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comp(5710..6480)
DNA (771bp) protein (257aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L453_KORCO
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:ACB07232.1}; TaxID=374847 species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptof
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
13_1_20cm_4_scaffold_710_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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6541..7410
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX33_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:ABG04045.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
hypothetical protein
13_1_20cm_4_scaffold_710_12
RBG_16_Archaea_50_20_curated, Archaea

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7695..8228
DNA (534bp) protein (178aa)
proteasome subunit beta (EC:3.4.25.1); K03433 proteasome beta subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
psmB2; proteasome, subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=PSB_METTH
13_1_20cm_4_scaffold_710_13
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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8331..10193
DNA (1863bp) protein (621aa)
Putative uncharacterized protein PH1404 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O50112_PYRHO
kh-domain/beta-lactamase-domain protein; K07041 Tax=RBG_13_Bathyarchaeota_38_9_curated
mRNA 3'-end processing factor
13_1_20cm_4_scaffold_710_14

Not on your lists

comp(10204..10530)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=G3C9I1_9ARCH
Marine sediment metagenome DNA, contig: S12H4_S09619 {ECO:0000313|EMBL:GAI88355.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Protein of unknown function (DUF552)
13_1_20cm_4_scaffold_710_15
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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comp(10624..10980)
DNA (357bp) protein (119aa)
RNA-binding protein; K07575 PUA domain protein Tax=RBG_13_Bathyarchaeota_52_12_curated
PUA domain-containing protein
Universal PUA-domain-containing protein id=5800007 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
13_1_20cm_4_scaffold_710_16
unknown

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comp(10935..11180)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_20cm_4_scaffold_710_17
unknown

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11646..14291
DNA (2646bp) protein (882aa)

This feature has no annotations

Displaying 17 items

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