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13_1_20cm_4_scaffold_7364

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_7364_1
unknown

Not on your lists

comp(1..192)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_4_scaffold_7364_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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204..2261
DNA (2058bp) protein (686aa)
GAF sensor hybrid histidine kinase Tax=GWC2_Gemmatimonadetes_71_10_curated
Integral membrane sensor hybrid histidine kinase id=1843283 bin=GWA2_Elusimicrobia_66_18 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
PAS/PAC sensor signal transduction histidine kinase/response regulator
13_1_20cm_4_scaffold_7364_3
unknown

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2298..2570
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_20cm_4_scaffold_7364_4
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2588..3901)
DNA (1314bp) protein (438aa)
Extracellular repeat protein, HAF family n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M895_GEODF
HAF repeat protein {ECO:0000313|EMBL:ACM20361.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (stra
extracellular repeat-containing protein, HAF family
13_1_20cm_4_scaffold_7364_5
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

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comp(4008..5237)
DNA (1230bp) protein (410aa)
putative oxidoreductase; K03885 NADH dehydrogenase [EC:1.6.99.3] Tax=RBG_13_Chloroflexi_66_10_curated
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain-containing protein id=4451068 bin=GWF2_Lentisphaerae_57_35 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459 rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein
13_1_20cm_4_scaffold_7364_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(5231..5545)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000365D217
UPF0145 protein Cflav_PD5227 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" sou
hypothetical protein
13_1_20cm_4_scaffold_7364_7
Streptomyces xiamenensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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5637..6347
DNA (711bp) protein (237aa)
succinate dehydrogenase n=1 Tax=Streptomyces sp. AA0539 RepID=UPI0002D60479
Succinate dehydrogenase {ECO:0000313|EMBL:AKG42368.1}; TaxID=408015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces xiamenensis.;"
sdhC2; putative succinate dehydrogenase cytochrome b subunit
13_1_20cm_4_scaffold_7364_8
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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6350..8275
DNA (1926bp) protein (642aa)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:ABU59134.1}; EC=1.3.99.1 {ECO:0000313|EMBL:ABU59134.1};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNJ3_ROSCS
13_1_20cm_4_scaffold_7364_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8275..9057
DNA (783bp) protein (261aa)
sdhB1; succinate dehydrogenase/fumarate reductase iron-sulfur subunit (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B6R6_HERA2
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
13_1_20cm_4_scaffold_7364_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9062..9895)
DNA (834bp) protein (278aa)
mdh; malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Malate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A902_GEMAT
Malate dehydrogenase
13_1_20cm_4_scaffold_7364_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10965..11357)
DNA (393bp) protein (131aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Molybdopterin biosynthesis MoaE protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGB6_RHOMR
molybdopterin biosynthesis MoaE protein
13_1_20cm_4_scaffold_7364_12
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(11504..11767)
DNA (264bp) protein (88aa)
Thiamine S protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IQW7_9GAMM
moaD; molybdopterin converting factor, subunit 1; K03636 molybdopterin synthase sulfur carrier subunit Tax=RBG_16_Acidobacteria_68_9_curated
thiamine S protein
13_1_20cm_4_scaffold_7364_13
Neosynechococcus sphagnicola, Neosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(11791..13590)
DNA (1800bp) protein (600aa)
Peptidase M61 domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNU4_ROSCS
Peptidase M61 {ECO:0000313|EMBL:KGF72538.1}; TaxID=1497020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Neosynechococcus.;" source="Neosynechococcus sphagnicola sy1.;"
peptidase M61 domain-containing protein
13_1_20cm_4_scaffold_7364_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13691..14005)
DNA (315bp) protein (105aa)
DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A906_GEMAT
DNA-binding protein; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
histone family protein DNA-binding protein
13_1_20cm_4_scaffold_7364_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14060..15031)
DNA (972bp) protein (324aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A907_GEMAT
13_1_20cm_4_scaffold_7364_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15048..15413)
DNA (366bp) protein (122aa)
Preprotein translocase, SecG subunit n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCN5_ANADF
secG; protein-export membrane protein SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
preprotein translocase subunit SecG
13_1_20cm_4_scaffold_7364_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15430..16044)
DNA (615bp) protein (205aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Triosephosphate isomerase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TGK3_HELMI
tpiA; triosephosphate isomerase
13_1_20cm_4_scaffold_7364_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16041..17219)
DNA (1179bp) protein (393aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphoglycerate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A910_GEMAT
Phosphoglycerate kinase
13_1_20cm_4_scaffold_7364_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17216..17863)
DNA (648bp) protein (216aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Alicyclobacillus pohliae RepID=UPI000368027E
glyceraldehyde-3-phosphate dehydrogenase, type I
Displaying 19 items

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