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13_1_20cm_4_scaffold_767

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_767_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1..390
DNA (390bp) protein (130aa)
Signal recognition particle protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY3_GEMAT
ffh; signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Signal recognition 54 kDa protein
13_1_20cm_4_scaffold_767_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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398..655
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIA7_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsP; 30S ribosomal protein S16
13_1_20cm_4_scaffold_767_3
unknown

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700..924
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_20cm_4_scaffold_767_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

984..1460
DNA (477bp) protein (159aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_1_20cm_4_scaffold_767_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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1504..1884
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_20cm_4_scaffold_767_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1881..2393
DNA (513bp) protein (171aa)
Ribonuclease H (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribonuclease HII n=1 Tax=Sphingomonas wittichii RepID=UPI0002FBCBFD
Ribonuclease HII/HIII domain protein
13_1_20cm_4_scaffold_767_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2411..3841)
DNA (1431bp) protein (477aa)
DNA polymerase III n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B62325
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
family X DNA polymerase IV
13_1_20cm_4_scaffold_767_8
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3838..4014)
DNA (177bp) protein (59aa)
PHP domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JL64_9GAMM
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Planctomycetes_64_10_curated
PHP domain-containing protein
13_1_20cm_4_scaffold_767_9

Not on your lists

4158..7250
DNA (3093bp) protein (1031aa)
TonB-dependent receptor n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB93_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AGH13559.1}; TaxID=1256902 species="Bacteria.;" source="bacterium symbiont of Plakortis simplex pPS11G3.;"
hypothetical protein
13_1_20cm_4_scaffold_767_10
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(7325..8179)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJW3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF84975.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_20cm_4_scaffold_767_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8176..9063)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D2514
methyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
methyltransferase
13_1_20cm_4_scaffold_767_12
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9130..9378)
DNA (249bp) protein (83aa)
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADW69404.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella
13_1_20cm_4_scaffold_767_trna_1
unknown

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9530..9602
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_767_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(9614..10000)
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_767_14
unknown

Not on your lists

10155..10568
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_20cm_4_scaffold_767_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10576..11439
DNA (864bp) protein (288aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=GWC2_Gemmatimonadetes_71_10_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Thermincola potens (strain JR) RepID=D5XAE5_THEPJ
13_1_20cm_4_scaffold_767_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11514..11756
DNA (243bp) protein (81aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_767_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11753..12160
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_767_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12157..13737
DNA (1581bp) protein (527aa)
transglycosylase, slt family; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative transglycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U3_GEMAT
putative transglycosylase
13_1_20cm_4_scaffold_767_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13872..14513)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lytic transglycosylase catalytic
Displaying 20 items

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