ggKbase home page

13_1_20cm_4_scaffold_823

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_823_1
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
13_1_20cm_4_scaffold_823_2
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(144..1052)
DNA (909bp) protein (303aa)
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Anti-sigma-factor antagonist id=4337253 bin=GWC2_Ignavibacteria_56_12 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome rbh
anti-sigma-factor antagonist
13_1_20cm_4_scaffold_823_3
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(1655..2812)
DNA (1158bp) protein (386aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] Tax=RBG_16_Chloroflexi_57_11_curated
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Schlesneria paludicola RepID=UPI00029B1174
13_1_20cm_4_scaffold_823_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2812..3456)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W2_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:BAH37622.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
hypothetical protein
13_1_20cm_4_scaffold_823_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3554..5182)
DNA (1629bp) protein (543aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
13_1_20cm_4_scaffold_823_6
unknown

Not on your lists

comp(5186..5407)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_20cm_4_scaffold_823_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5731..6702
DNA (972bp) protein (324aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E142_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHG90034.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_4_scaffold_823_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6699..9164)
DNA (2466bp) protein (822aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W1_GEMAT
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAH37621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
putative exopolysaccharide biosynthesis protein
13_1_20cm_4_scaffold_823_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

9486..10484
DNA (999bp) protein (333aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
NtrC family two-component response regulator Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NtrC family two-component response regulator
13_1_20cm_4_scaffold_823_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

10528..10929
DNA (402bp) protein (134aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
NtrC family two-component response regulator Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
sigma-54 factor interaction domain-containing protein
13_1_20cm_4_scaffold_823_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10948..11745
DNA (798bp) protein (266aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5V9_GEMAT
ATP-binding region ATPase domain protein
13_1_20cm_4_scaffold_823_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11748..12635
DNA (888bp) protein (296aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAH37627.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH37627.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimon
putative glycosyltransferase (EC:2.4.-.-)
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W7_GEMAT
13_1_20cm_4_scaffold_823_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(12658..13842)
DNA (1185bp) protein (395aa)
Glycosyl transferase, group 2 {ECO:0000313|EMBL:CBK42567.1}; EC=2.4.1.- {ECO:0000313|EMBL:CBK42567.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source
glycosyl transferase group 2 protein (EC:2.4.1.-)
Glycosyl transferase, group 2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH30_9BACT
13_1_20cm_4_scaffold_823_14
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13842..14960)
DNA (1119bp) protein (373aa)
Glycosyl transferase group 1 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M2W2_GEODF
Glycoside hydrolase {ECO:0000313|EMBL:KIE41990.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
group 1 glycosyl transferase
13_1_20cm_4_scaffold_823_15
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

15307..16872
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037BC665
O-antigen and teichoic acid export protein Tax=RBG_16_RIF03_38_10_curated
O-antigen and teichoic acid export protein
13_1_20cm_4_scaffold_823_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16951..18168
DNA (1218bp) protein (406aa)
Methicillin resistance protein
Methicillin resistance protein {ECO:0000313|EMBL:AHG90004.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_823_17
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18445..19773
DNA (1329bp) protein (443aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IL87_ANADE
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase {ECO:0000313|EMBL:GAO03953.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anae
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_20cm_4_scaffold_823_18
unknown

Not on your lists

comp(19797..20651)
DNA (855bp) protein (285aa)

This feature has no annotations

13_1_20cm_4_scaffold_823_19
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(20670..21581)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B30BD7
type 11 methyltransferase Tax=RBG_16_Chloroflexi_58_8_curated
13_1_20cm_4_scaffold_823_20
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

22093..23241
DNA (1149bp) protein (383aa)
Cellulose biosynthesis (CelD)-like protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UHT4_ANASK
cellulose biosynthesis (CelD)-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
cellulose biosynthesis (CelD)-like protein
13_1_20cm_4_scaffold_823_21
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

23251..24279
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJB0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CBK43484.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein
13_1_20cm_4_scaffold_823_22
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24240..25445)
DNA (1206bp) protein (402aa)
Glycosyl transferase group 1 n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RJN1_DESPD
sugar transferase Tax=CG_Delta_03
group 1 glycosyl transferase
13_1_20cm_4_scaffold_823_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25462..26064)
DNA (603bp) protein (201aa)
O-antigen polymerase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U7_GEMAT
O-antigen polymerase family protein {ECO:0000313|EMBL:BAH37607.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiac
O-antigen polymerase family protein
13_1_20cm_4_scaffold_823_24

Not on your lists

comp(26064..26708)
DNA (645bp) protein (215aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA12860.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_20cm_4_scaffold_823_25
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

27003..29147
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIL2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CBK43099.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein
13_1_20cm_4_scaffold_823_26
R_RIF_OD1_13_59_16, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(29065..30015)
DNA (951bp) protein (317aa)
polysaccharide deacetylase (EC:3.1.1.58 3.5.1.41)
Polysaccharide deacetylase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IYR3_HERSS
polysaccharide deacetylase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_59_16_curated
13_1_20cm_4_scaffold_823_27
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30012..31235)
DNA (1224bp) protein (408aa)
glycosyl transferase family 2 protein Tax=GWB2_Desulfobacterales_56_26_curated
Glycosyl transferase family 2 id=2302448 bin=GWB2_Desulfobacterales_56_26 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
glycosyl transferase family protein
13_1_20cm_4_scaffold_823_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31370..32566)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T8_GEMAT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:AHG91641.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Ig domain protein group 2 domain protein
Displaying 28 items

View Taxonomy