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13_1_20cm_4_scaffold_839

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_839_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..2295
DNA (2295bp) protein (765aa)
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ComE-like competence protein
13_1_20cm_4_scaffold_839_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2307..3542
DNA (1236bp) protein (412aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapL1; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase id=4231234 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_839_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3669..4658)
DNA (990bp) protein (330aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4231232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_839_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4748..5746
DNA (999bp) protein (333aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=GWA2_Rokubacteria_73_35_curated
Aminodeoxychorismate lyase id=4801447 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
aminodeoxychorismate lyase
13_1_20cm_4_scaffold_839_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5770..6441
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferases id=4231028 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyltransferase
13_1_20cm_4_scaffold_839_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6438..7739
DNA (1302bp) protein (434aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=GWA2_Rokubacteria_70_23_curated
Argininosuccinate lyase id=4958131 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
argininosuccinate lyase
13_1_20cm_4_scaffold_839_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7736..8809
DNA (1074bp) protein (358aa)
Fibronectin, type III Tax=GWA2_Rokubacteria_73_35_curated
Putative Fibronectin, type III id=2164681 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fibronectin, type III
13_1_20cm_4_scaffold_839_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8845..10095
DNA (1251bp) protein (417aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=2164678 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_839_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10092..10979
DNA (888bp) protein (296aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4801457 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_839_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10989..11837
DNA (849bp) protein (283aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=GWA2_Rokubacteria_73_35_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=2164669 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_839_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11850..12608
DNA (759bp) protein (253aa)
ureidoglycolate lyase (EC:4.3.2.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ureidoglycolate lyase (EC:4.3.2.3)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase id=14627106 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
13_1_20cm_4_scaffold_839_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12736..13095
DNA (360bp) protein (120aa)
folQ; dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=GWA2_Rokubacteria_73_35_curated
Dihydroneopterin aldolase id=2164663 bin=GWA2_Methylomirabilis_73_35 species=Streptococcus ictaluri genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydroneopterin aldolase
13_1_20cm_4_scaffold_839_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13095..13643
DNA (549bp) protein (183aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RIFCSPLOWO2_02_FULL_Rokubact
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase id=2164593 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
13_1_20cm_4_scaffold_839_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13650..14162
DNA (513bp) protein (171aa)
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=2164591 bin=GWA2_Methylomirabilis_73_35 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24
13_1_20cm_4_scaffold_839_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14159..14860
DNA (702bp) protein (234aa)
id=14627111 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14627111 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_839_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14812..16101)
DNA (1290bp) protein (430aa)
O-Antigen Polymerase family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
O-Antigen Polymerase family id=14627112 bin=bin7_NC10_sister species=Nitrospina sp. AB-629-B18 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
O-Antigen Polymerase family
13_1_20cm_4_scaffold_839_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16124..17128)
DNA (1005bp) protein (335aa)
capsular polysaccharide synthesis protein (cpsA) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative capsular polysaccharide synthesis protein (CpsA) id=4814557 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
capsular polysaccharide synthesis protein (cpsA)
13_1_20cm_4_scaffold_839_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17358..17948)
DNA (591bp) protein (197aa)
putative glycosyl transferase, group 1 (EC:2.4.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glycosyl transferase, group 1 (EC:2.4.-.-)
Glycosyltransferase id=4814558 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_839_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18405..18986)
DNA (582bp) protein (194aa)
NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=GWC2_Rokubacteria_70_16_curated
NAD-dependent epimerase/dehydratase id=2250555 bin=GWA2_Elusimicrobia_69_24 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_839_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18929..19246)
DNA (318bp) protein (106aa)
NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=GWC2_Rokubacteria_70_16_curated
NAD-dependent epimerase/dehydratase id=4814559 bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_839_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19274..20065)
DNA (792bp) protein (264aa)
glycosyl transferase family protein Tax=GWA2_Rokubacteria_70_23_curated
Glycosyl transferase, family 2 id=4497594 bin=GWC2_Methylomirabilis_70_24 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
family 2 glycosyl transferase
13_1_20cm_4_scaffold_839_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20062..21018)
DNA (957bp) protein (319aa)
type 12 methyltransferase Tax=GWA2_Rokubacteria_70_23_curated
Methyltransferase type 12 id=4209609 bin=GWF2_Methylomirabilis_70_14 species=Marinobacter nanhaiticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
type 12 methyltransferase
13_1_20cm_4_scaffold_839_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(21036..21872)
DNA (837bp) protein (279aa)
type 11 methyltransferase Tax=GWC2_Rokubacteria_70_16_curated
Methyltransferase type 11 id=4814561 bin=GWC2_Methylomirabilis_70_16 species=Nodularia spumigena genus=Nodularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
type 11 methyltransferase
13_1_20cm_4_scaffold_839_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21880..22419)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SEQ6_RHIET
Uncharacterized protein {ECO:0000313|EMBL:AGS20632.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
hypothetical protein
Displaying 24 items

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