ggKbase home page

13_1_20cm_4_scaffold_872

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_872_1
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2623
DNA (2622bp) protein (874aa)
Probable beta-lactam antibiotic acylase family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GY11_SORC5
Probable beta-lactam antibiotic acylase family protein {ECO:0000313|EMBL:CAN97169.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; So
beta-lactam antibiotic acylase
13_1_20cm_4_scaffold_872_2
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2620..5691
DNA (3072bp) protein (1024aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J7R6_ANAD2 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL63408.1}; Flags: Precursor;; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; An
hypothetical protein
13_1_20cm_4_scaffold_872_3
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5705..6922
DNA (1218bp) protein (406aa)
Membrane protein involved in aromatic hydrocarbon degradation n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H6A7_ANADF
aromatic hydrocarbon degradation membrane protein; K06076 long-chain fatty acid transport protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
aromatic hydrocarbon degradation membrane protein
13_1_20cm_4_scaffold_872_4
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6930..8444)
DNA (1515bp) protein (505aa)
Metallo-beta-lactamase family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MT48_CORCM rbh
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:AFE08935.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.
gloB; metallo-beta-lactamase family protein
13_1_20cm_4_scaffold_872_5
Leersia perrieri, Leersia, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

8497..9183
DNA (687bp) protein (229aa)
fatty acid hydroxylase n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B3E7F1
Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR03G05270.2}; TaxID=77586 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; P
Sterol desaturase
13_1_20cm_4_scaffold_872_6
CG_Elusi_02, Elusimicrobia, Bacteria

Not on your lists

9237..10142
DNA (906bp) protein (302aa)
Marine sediment metagenome DNA, contig: S01H4_C03443 Tax=CG_Elusi_02
13_1_20cm_4_scaffold_872_7
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(10007..10942)
DNA (936bp) protein (312aa)
amidohydrolase 3; K07047 Tax=RBG_13_Planctomycetes_62_9_curated
Amidohydrolase 3 id=1760470 bin=GWE2_Bacteroidetes_41_25 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWE2_Bacteroidetes_41_25 organism_group=Bacteroidetes organism_desc=Good
amidohydrolase
13_1_20cm_4_scaffold_872_8
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11712..12980
DNA (1269bp) protein (423aa)
HD domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUH1_CORCM rbh
HD domain-containing protein {ECO:0000313|EMBL:AFE06953.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source
HD domain-containing protein
13_1_20cm_4_scaffold_872_9
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(12981..13994)
DNA (1014bp) protein (338aa)
PAS domain S-box Tax=GWC2_Nitrospirae_56_14_curated
PAS domain S-box id=4744314 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Cache/PAS domain-containing sensor histidine kinase response regulator
13_1_20cm_4_scaffold_872_10
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14043..15539
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PS49_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX65352.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
GAF domain-containing protein
13_1_20cm_4_scaffold_872_11
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15536..16636)
DNA (1101bp) protein (367aa)
M28 family peptidase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UCZ9_MYXSD
M28 family peptidase {ECO:0000313|EMBL:AGC44339.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcu
M28 family peptidase
13_1_20cm_4_scaffold_872_12
unknown

Not on your lists

16827..17069
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_20cm_4_scaffold_872_13
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(17066..17923)
DNA (858bp) protein (286aa)
rhodanese domain-containing protein Tax=CSP1_4_Chloroflexi
rhodanese domain-containing protein id=14630293 bin=bin8_Chloro species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin8_Chloro organism_group=Chloroflexi
rhodanese domain-containing protein
13_1_20cm_4_scaffold_872_14
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18055..19227
DNA (1173bp) protein (391aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9J6_ANADF rbh
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:ABS25392.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterinea
response regulator receiver modulated metal dependent phosphohydrolase
13_1_20cm_4_scaffold_872_15
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19249..20427)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CQC1_MYXFH
Methyltransferase {ECO:0000313|EMBL:KFE63963.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium
hypothetical protein
13_1_20cm_4_scaffold_872_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20452..21519
DNA (1068bp) protein (356aa)
putative methanol dehydrogenase regulatory protein MoxR; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=CSP1_6_Rokubacteria
putative methanol dehydrogenase regulatory protein MoxR; K03924 MoxR-like ATPase [EC:3.6.3.-] id=14627667 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPase (EC:3.6.3.-)
13_1_20cm_4_scaffold_872_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21516..22544
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FNN9_SORC5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_4_scaffold_872_18
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22541..25522
DNA (2982bp) protein (994aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TR22_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK87819.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
hypothetical protein
13_1_20cm_4_scaffold_872_19
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25661..26377
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PE87_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX60627.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
hypothetical protein
13_1_20cm_4_scaffold_872_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26387..27097
DNA (711bp) protein (237aa)
Metallophosphoesterase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7H9_VARPE
Metallophosphoesterase {ECO:0000313|EMBL:ADU34901.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (s
metallophosphoesterase
13_1_20cm_4_scaffold_872_21
unknown

Not on your lists

comp(27106..27729)
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_20cm_4_scaffold_872_22
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27754..29703)
DNA (1950bp) protein (650aa)
Peptidase S8 and S53, subtilisin, kexin, sedolisin n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWG9_RUBXD
Peptidase S8 and S53, subtilisin, kexin, sedolisin {ECO:0000313|EMBL:ABG04259.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Ru
peptidase S8/S53 subtilisin kexin sedolisin
13_1_20cm_4_scaffold_872_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29847..30173
DNA (327bp) protein (109aa)
UPF0235 protein yggU n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JSD4_9GAMM
UPF0235 protein AFERRI_100227 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" so
hypothetical protein
13_1_20cm_4_scaffold_872_24
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(30152..32842)
DNA (2691bp) protein (897aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RBG_16_Anaeromyxobacter_69_14_curated
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UET3_ANASK rbh
13_1_20cm_4_scaffold_872_25
unknown

Not on your lists

comp(33029..34000)
DNA (972bp) protein (324aa)

This feature has no annotations

13_1_20cm_4_scaffold_872_26
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34117..34773)
DNA (657bp) protein (219aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7V0_ANADF
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABS24796.1}; Flags: Precursor;; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacterac
Rieske (2Fe-2S) domain-containing protein
13_1_20cm_4_scaffold_872_27
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34783..35466)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7V4_ANADF
Uncharacterized protein {ECO:0000313|EMBL:KFA93025.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
hypothetical protein
13_1_20cm_4_scaffold_872_28
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35870..36430)
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7V1_ANADF
Uncharacterized protein {ECO:0000313|EMBL:ABS24797.1}; Flags: Precursor;; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; An
hypothetical protein
13_1_20cm_4_scaffold_872_29
unknown

Not on your lists

comp(36504..36638)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 29 items

View Taxonomy