ggKbase home page

13_2_20cm_scaffold_11276

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_11276_1

Not on your lists

comp(141..650)
DNA (510bp) protein (170aa)
MarR family transcriptional regulator (Fragment) n=1 Tax=mine drainage metagenome RepID=T1A4C2_9ZZZZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EQD36685.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metage
transcriptional regulator, MarR family
13_2_20cm_scaffold_11276_2
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

897..1169
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas syringae pv. aptata str. DSM 50252 RepID=F3J0N1_PSEAP
Uncharacterized protein {ECO:0000313|EMBL:EGH77953.1}; TaxID=629268 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" sour
CopG family transcriptional regulator
13_2_20cm_scaffold_11276_3
unknown

Not on your lists

comp(1160..1468)
DNA (309bp) protein (103aa)

This feature has no annotations

13_2_20cm_scaffold_11276_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1800..1934
DNA (135bp) protein (45aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_2_20cm_scaffold_11276_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1927..2421
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZL6_SORCE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
13_2_20cm_scaffold_11276_6
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2666..2917
DNA (252bp) protein (84aa)
Rv0623 family protein transcription factor n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DWF9_THIND
antitoxin
Antitoxin {ECO:0000313|EMBL:AHE97108.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocya
13_2_20cm_scaffold_11276_7
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2968..3321
DNA (354bp) protein (118aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; T
UPI0003C7FB81 related cluster n=1 Tax=unknown RepID=UPI0003C7FB81
hypothetical protein
13_2_20cm_scaffold_11276_8
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3367..4458)
DNA (1092bp) protein (364aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysteinyl-tRNA synthetase n=1 Tax=Methylosarcina fibrata RepID=UPI00037945AF
cysteinyl-tRNA synthetase
13_2_20cm_scaffold_11276_9

Not on your lists

comp(4451..4684)
DNA (234bp) protein (78aa)
Cysteinyl-tRNA synthetase {ECO:0000313|EMBL:EQD33503.1}; EC=6.1.1.16 {ECO:0000313|EMBL:EQD33503.1};; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteinyl-tRNA synthetase (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YK20_9ZZZZ
13_2_20cm_scaffold_11276_10

Not on your lists

comp(4681..5307)
DNA (627bp) protein (209aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamyl-tRNA synthetase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AT47_9ZZZZ
Glutamyl-tRNA synthetase {ECO:0000313|EMBL:EQD63751.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_2_20cm_scaffold_11276_11
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5499..6137
DNA (639bp) protein (213aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
13_2_20cm_scaffold_11276_12
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6134..7192
DNA (1059bp) protein (353aa)
Transposase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EWX3_CUPNN rbh
transposase rbh
Transposase {ECO:0000313|EMBL:EYS96232.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
13_2_20cm_scaffold_11276_13
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7296..7961
DNA (666bp) protein (222aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thi
Peptidyl-prolyl cis-trans isomerase A (Rotamase A) (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YWC0_9ZZZZ
peptidyl-prolyl cis-trans isomerase B
13_2_20cm_scaffold_11276_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7967..8695
DNA (729bp) protein (243aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylgluco
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQ93_9GAMM
UDP-2,3-diacylglucosamine hydrolase
13_2_20cm_scaffold_11276_15
unknown

Not on your lists

8779..9111
DNA (333bp) protein (111aa)

This feature has no annotations

13_2_20cm_scaffold_11276_16
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9297..10511
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Burkholderia pseudomallei RepID=UPI00016B0EC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA48370.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source
Displaying 16 items

View Taxonomy