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13_2_20cm_scaffold_1168

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1168_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2..985
DNA (984bp) protein (328aa)
L-sorbosone dehydrogenase n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CVN9_METMJ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-sorbosone dehydrogenase
13_2_20cm_scaffold_1168_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

942..1349
DNA (408bp) protein (136aa)
Cytochrome c class I n=1 Tax=Burkholderia terrae BS001 RepID=I5D0N8_9BURK
class I cytochrome c Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cytochrome C class I
13_2_20cm_scaffold_1168_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1349..1543
DNA (195bp) protein (65aa)
Cytochrome c, class I n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRM9_POLNA
cytochrome c, class I Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
class I cytochrome c
13_2_20cm_scaffold_1168_4
unknown

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1644..1895
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_1168_5
unknown

Not on your lists

comp(1892..2350)
DNA (459bp) protein (153aa)

This feature has no annotations

13_2_20cm_scaffold_1168_6
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2308..3396)
DNA (1089bp) protein (363aa)
Lipolytic enzyme, G-D-S-L family n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L6K4_MAGSM rbh
GDSL family lipase
Lipolytic enzyme, G-D-S-L family {ECO:0000313|EMBL:ABK43597.1}; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magneto
13_2_20cm_scaffold_1168_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3429..4889)
DNA (1461bp) protein (487aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626624 bin=bin7_NC10_sister species=Caminibacter mediatlanticus genus=Caminibacter taxon_order=Nautiliales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_1168_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4994..6079
DNA (1086bp) protein (362aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Patatin id=4226283 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_1168_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6110..7318)
DNA (1209bp) protein (403aa)
Sugar phosphate permease n=1 Tax=Burkholderia sp. BT03 RepID=J2H0Y3_9BURK rbh
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
major facilitator superfamily protein
13_2_20cm_scaffold_1168_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7328..8521)
DNA (1194bp) protein (398aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4169030 bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
alpha-methylacyl-CoA racemase
13_2_20cm_scaffold_1168_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8532..9902)
DNA (1371bp) protein (457aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4187612 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
uncharacterized protein involved in propionate catabolism
13_2_20cm_scaffold_1168_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10224..10931)
DNA (708bp) protein (236aa)
hypothetical protein; K09990 hypothetical protein id=14626945 bin=bin7_NC10_sister species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K09990 hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_1168_13
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10928..11428)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000366735C
Uncharacterized protein {ECO:0000313|EMBL:KFA88134.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
hypothetical protein
13_2_20cm_scaffold_1168_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11467..13494
DNA (2028bp) protein (676aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=GWA2_Rokubacteria_70_23_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) id=4534565 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1168_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13491..15500
DNA (2010bp) protein (670aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAQ3_VERMA rbh
5-oxoprolinase
13_2_20cm_scaffold_1168_16
R_OD1_Kaiserbacteria_54_22, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

15570..15755
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003604025
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_22_curated
13_2_20cm_scaffold_1168_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15768..16484)
DNA (717bp) protein (239aa)
beta-lactamase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-lactamase family protein id=4243565 bin=GWC2_Methylomirabilis_70_24 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Beta-lactamase-like
13_2_20cm_scaffold_1168_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16555..17364)
DNA (810bp) protein (270aa)
Putative ABC transporter permease protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR4_9BACT
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease
13_2_20cm_scaffold_1168_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17361..18188)
DNA (828bp) protein (276aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUF9_9BACT
thuF; putative sugar ABC transporter permease; K02025 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease
13_2_20cm_scaffold_1168_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18268..19488)
DNA (1221bp) protein (407aa)
Putative sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR6_9BACT
sugar ABC transporter periplasmic sugar-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sugar ABC transporter periplasmic sugar-binding protein
13_2_20cm_scaffold_1168_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19532..20695
DNA (1164bp) protein (388aa)
fadE; acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase id=5015980 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1168_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21139..22965
DNA (1827bp) protein (609aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_scaffold_1168_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

22962..23540
DNA (579bp) protein (193aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14624311 bin=bin5_DeltaP species=Desulfovibrio alkalitolerans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
13_2_20cm_scaffold_1168_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23798..24205
DNA (408bp) protein (136aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpR family two-component response regulator
13_2_20cm_scaffold_1168_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24202..24984
DNA (783bp) protein (261aa)
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
type 11 methyltransferase
13_2_20cm_scaffold_1168_26
unknown

Not on your lists

25099..25794
DNA (696bp) protein (232aa)

This feature has no annotations

13_2_20cm_scaffold_1168_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26043..26660
DNA (618bp) protein (206aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
13_2_20cm_scaffold_1168_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26657..28801
DNA (2145bp) protein (715aa)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
putative two-component hybrid sensor and regulator
13_2_20cm_scaffold_1168_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28815..31505
DNA (2691bp) protein (897aa)
Histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PAS domain S-box id=14626496 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Displaying 29 items

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