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13_2_20cm_scaffold_1255

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1255_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

204..1175
DNA (972bp) protein (324aa)
aceA; isocitrate lyase (EC:2.7.8.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Isocitrate lyase id=3087646 bin=GWC2_Methylomirabilis_70_16 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isocitrate lyase
13_2_20cm_scaffold_1255_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1276..3099
DNA (1824bp) protein (608aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amino acid permease-associated region id=2197762 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
trkD; potassium transport protein Kup
13_2_20cm_scaffold_1255_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3204..4124
DNA (921bp) protein (307aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II id=2197712 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1255_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4420..5859
DNA (1440bp) protein (480aa)
EmrB/QacA family drug resistance transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
EmrB/QacA family drug resistance transporter id=2197710 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
EmrB/QacA subfamily drug resistance transporter
13_2_20cm_scaffold_1255_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5862..6365
DNA (504bp) protein (168aa)
hypothetical protein id=2197709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_1255_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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6531..6929
DNA (399bp) protein (133aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=14627149 bin=bin7_NC10_sister species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_1255_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6930..8846
DNA (1917bp) protein (639aa)
ABC transporter ATP-binding protein with duplicated ATPase domains (EC:3.6.3.-)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1255_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8843..9160
DNA (318bp) protein (106aa)
HNH endonuclease family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HNH endonuclease family protein id=2197705 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease family protein
13_2_20cm_scaffold_1255_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9266..9583
DNA (318bp) protein (106aa)
helix-hairpin-helix repeat-containing competence protein ComEA; K02237 competence protein ComEA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence protein ComEA helix-hairpin-helix repeat protein id=2197704 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA uptake protein related DNA-binding protein
13_2_20cm_scaffold_1255_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9996..10196)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein id=4560666 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=GWA2_Rokubacteria_70_23_curated
cold-shock DNA-binding domain-containing protein
13_2_20cm_scaffold_1255_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10516..10716)
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Cold-shock DNA-binding domain protein id=4622878 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cold-shock protein
13_2_20cm_scaffold_1255_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10920..11951)
DNA (1032bp) protein (344aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiol-disulfide oxidoreductase domain-containing protein
13_2_20cm_scaffold_1255_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12423..13454
DNA (1032bp) protein (344aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mreB; Rod shape-determining protein mreB id=14626892 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rod shape-determining protein MreB
13_2_20cm_scaffold_1255_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13480..14316
DNA (837bp) protein (279aa)
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative cell shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=GWA2_Rokubacteria_73_35_curated
rod shape-determining protein MreC
13_2_20cm_scaffold_1255_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14329..14808
DNA (480bp) protein (160aa)
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K03571 rod shape-determining protein MreD Tax=GWA2_Rokubacteria_73_35_curated
Rod shape-determining protein MreD
13_2_20cm_scaffold_1255_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14859..16607
DNA (1749bp) protein (583aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_2_20cm_scaffold_1255_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16612..17703
DNA (1092bp) protein (364aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rod shape-determining protein RodA id=3227259 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rod shape-determining protein RodA
13_2_20cm_scaffold_1255_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17758..19302
DNA (1545bp) protein (515aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNAse G id=3227257 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ribonuclease
13_2_20cm_scaffold_1255_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19489..19854
DNA (366bp) protein (122aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3927613 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1255_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19918..20130
DNA (213bp) protein (71aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3927621 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1255_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20130..21146
DNA (1017bp) protein (339aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
copper-translocating P-type ATPase (EC:3.6.3.4)
Cu(2+)-binding/translocating P-type ATPase id=3927624 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 21 items

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