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13_2_20cm_scaffold_1351

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1351_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..653)
DNA (651bp) protein (217aa)
Luciferase family protein id=3859443 bin=GWF2_Methylomirabilis_70_14 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
13_2_20cm_scaffold_1351_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(658..1872)
DNA (1215bp) protein (405aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase id=3960006 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
short chain dehydrogenase
13_2_20cm_scaffold_1351_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2581..3417
DNA (837bp) protein (279aa)
serine/threonine-protein kinase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625845 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_1351_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3928..5016
DNA (1089bp) protein (363aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
medium-chain fatty-acid-CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] id=14625844 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
13_2_20cm_scaffold_1351_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5080..6354
DNA (1275bp) protein (425aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_2_20cm_scaffold_1351_6
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6361..7302
DNA (942bp) protein (314aa)
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_2_20cm_scaffold_1351_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7302..8141
DNA (840bp) protein (280aa)
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=2259312 bin=GWA2_Methylomirabilis_73_35 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
13_2_20cm_scaffold_1351_8
unknown

Not on your lists

comp(8134..9075)
DNA (942bp) protein (314aa)

This feature has no annotations

13_2_20cm_scaffold_1351_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9090..9767)
DNA (678bp) protein (226aa)
gltK1; protein GltK1; K10002 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltK1 id=2259316 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gltK1; protein GltK1
13_2_20cm_scaffold_1351_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9770..10483)
DNA (714bp) protein (238aa)
gltJ1; protein GltJ1; K10003 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltJ1 id=2259318 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
gltJ1; protein GltJ1
13_2_20cm_scaffold_1351_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10503..11360)
DNA (858bp) protein (286aa)
gltB1; protein GltB1 (EC:1.4.1.13); K10001 glutamate/aspartate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
gltB1; protein GltB1 (EC:1.4.1.13)
GltI id=3859487 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1351_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11374..12114)
DNA (741bp) protein (247aa)
Phosphate-transporting ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphate-transporting ATPase id=2259322 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_2_20cm_scaffold_1351_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12114..12614)
DNA (501bp) protein (167aa)
biotin/lipoyl attachment protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-CoA carboxylase biotin carboxylase subunit, putative id=2259324 bin=GWA2_Methylomirabilis_73_35 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Biotin/lipoic acid binding domain protein
13_2_20cm_scaffold_1351_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12611..14095)
DNA (1485bp) protein (495aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl CoA carboxylase, biotin carboxylase subunit id=2259326 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate carboxylase subunit A
13_2_20cm_scaffold_1351_15
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(14106..14888)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase/carnithine racemase Tax=RBG_16_Chloroflexi_63_12_curated
enoyl-CoA hydratase/isomerase id=1247847 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
enoyl-CoA hydratase/carnithine racemase
13_2_20cm_scaffold_1351_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14919..15344)
DNA (426bp) protein (142aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=14625738 bin=bin7_NC10_sister species=Eikenella corrodens genus=Eikenella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
13_2_20cm_scaffold_1351_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15341..15643)
DNA (303bp) protein (101aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha id=4681018 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
succinyl-CoA synthetase subunit alpha
Displaying 17 items

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