ggKbase home page

13_2_20cm_scaffold_16424

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_16424_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2..400
DNA (399bp) protein (133aa)
phoR; phosphate regulon sensor protein PhoR; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curate
Phosphate regulon sensor protein PhoR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ6_GEMAT
ATP-binding region ATPase domain protein
13_2_20cm_scaffold_16424_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

609..1505
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI00037AB901
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_scaffold_16424_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1524..2555
DNA (1032bp) protein (344aa)
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphate ABC transporter, periplasmic phosphate-binding protein id=3880880 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
ABC transporter periplasmic phosphate binding protein
13_2_20cm_scaffold_16424_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2658..3191
DNA (534bp) protein (178aa)
Phosphate ABC transporter, inner membrane subunit PstC n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WYS1_ACISM
phosphate ABC transporter permease; K02037 phosphate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphate ABC transporter permease
13_2_20cm_scaffold_16424_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3140..3619
DNA (480bp) protein (160aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMC5_KORVE
phosphate ABC transporter, inner membrane subunit PstC Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphate ABC transporter permease
13_2_20cm_scaffold_16424_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3658..4464
DNA (807bp) protein (269aa)
Phosphate transport system permease protein PstA n=1 Tax=uncultured bacterium F25-01 RepID=I3VIG0_9BACT
phosphate ABC transporter permease; K02038 phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphate ABC transporter membrane protein
13_2_20cm_scaffold_16424_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

5163..5918
DNA (756bp) protein (252aa)
phosphate transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] Tax=GWC2_Gemmatimonadetes_71_10_curated
Phosphate ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D136_9FIRM
phosphate transporter ATP-binding protein
13_2_20cm_scaffold_16424_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5915..6619
DNA (705bp) protein (235aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB06_GEMAT
phoU; phosphate transport system regulatory protein PhoU; K02039 phosphate transport system protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phoU; phosphate transport system regulatory protein PhoU
13_2_20cm_scaffold_16424_9
RIFOXYA1_FULL_Bacteriovorax_36_14_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

6661..7002
DNA (342bp) protein (114aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JF76_ANAD2
methylase involved in ubiquinone/menaquinone biosynthesis Tax=RIFOXYA1_FULL_Bacteriovorax_36_14_curated
protein-tyrosine phosphatase
13_2_20cm_scaffold_16424_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6984..7748)
DNA (765bp) protein (255aa)
Rhomboid family protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAN7_ANADF
rhomboid family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rhomboid family protein
13_2_20cm_scaffold_16424_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7891..9810
DNA (1920bp) protein (640aa)
Chaperone protein DnaK n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB12_GEMAT
dnaK; chaperone protein DnaK; K04043 molecular chaperone DnaK Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperone protein dnaK
13_2_20cm_scaffold_16424_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

9823..11385
DNA (1563bp) protein (521aa)
Putative S1 family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB13_GEMAT
putative S1 family peptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
PDZ/DHR/GLGF domain protein
13_2_20cm_scaffold_16424_13
unknown

Not on your lists

comp(11371..12060)
DNA (690bp) protein (230aa)

This feature has no annotations

13_2_20cm_scaffold_16424_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12477..13463)
DNA (987bp) protein (329aa)
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein {ECO:0000313|EMBL:AHG89948.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative CtaG protein id=4743809 bin=GWC2_Methylomirabilis_70_16 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_16424_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13460..13762)
DNA (303bp) protein (101aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome C oxidase subunit IV
13_2_20cm_scaffold_16424_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13782..16052)
DNA (2271bp) protein (757aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase, subunit I id=4464470 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 16 items

View Taxonomy