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13_2_20cm_scaffold_1648

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1648_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..334)
DNA (333bp) protein (111aa)
Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5E5_GEOUR
two component, sigma54 specific, Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
two component sigma-54 specific Fis family transcriptional regulator
13_2_20cm_scaffold_1648_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(491..1180)
DNA (690bp) protein (230aa)
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
cytochrome c class I
13_2_20cm_scaffold_1648_3
unknown

Not on your lists

comp(1195..1383)
DNA (189bp) protein (63aa)

This feature has no annotations

13_2_20cm_scaffold_1648_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1385..2320)
DNA (936bp) protein (312aa)
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein Tax=GWA2_Rokubacteria_73_35_curated
putative VacJ-like lipoprotein
13_2_20cm_scaffold_1648_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2547..2777
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3461019 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1648_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2820..4061)
DNA (1242bp) protein (414aa)
Phosphonoacetate hydrolase id=1746034 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
phosphonoacetate hydrolase Tax=GWA2_Rokubacteria_73_35_curated
phosphonoacetate hydrolase
13_2_20cm_scaffold_1648_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4093..4689)
DNA (597bp) protein (199aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_2_20cm_scaffold_1648_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4702..5664)
DNA (963bp) protein (321aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase catalytic subunit YedY id=4762289 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_2_20cm_scaffold_1648_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5712..6392)
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpR family response regulator
13_2_20cm_scaffold_1648_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6392..7906)
DNA (1515bp) protein (505aa)
sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
sensor histidine kinase
13_2_20cm_scaffold_1648_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7915..8226)
DNA (312bp) protein (104aa)
thiol-disulfide isomerase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase
13_2_20cm_scaffold_1648_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8242..8439)
DNA (198bp) protein (66aa)
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative thioredoxin Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_1648_13
unknown

Not on your lists

comp(8477..8587)
DNA (111bp) protein (37aa)

This feature has no annotations

13_2_20cm_scaffold_1648_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8731..9414)
DNA (684bp) protein (228aa)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
class I fumarate hydratase
13_2_20cm_scaffold_1648_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9411..10349)
DNA (939bp) protein (313aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_2_20cm_scaffold_1648_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10363..11607)
DNA (1245bp) protein (415aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sugar phosphate permease id=3708852 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate permease
13_2_20cm_scaffold_1648_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11604..11888)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1648_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11914..12228)
DNA (315bp) protein (105aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1648_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12284..12901)
DNA (618bp) protein (206aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=1746145 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1648_20
unknown

Not on your lists

comp(12973..13131)
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 20 items

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